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    Hoxa13 homeobox A13 [ Mus musculus (house mouse) ]

    Gene ID: 15398, updated on 2-Oct-2018

    Summary

    Official Symbol
    Hoxa13provided by MGI
    Official Full Name
    homeobox A13provided by MGI
    Primary source
    MGI:MGI:96173
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Hd; Hox-1.10
    Expression
    Biased expression in colon adult (RPKM 25.4), bladder adult (RPKM 9.5) and 1 other tissue See more
    Orthologs

    Genomic context

    See Hoxa13 in Genome Data Viewer
    Location:
    6 B3; 6 25.41 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (52258853..52260880, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (52208852..52210874, complement)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene homeobox A10 Neighboring gene homeobox A11 Neighboring gene homeobox A11, opposite strand Neighboring gene Hoxa distal transcript antisense RNA Neighboring gene even skipped homeotic gene 1, opposite strand Neighboring gene even-skipped homeobox 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC124020, MGC124021, MGC124022

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    anatomical structure morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    animal organ morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    artery morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    branching involved in prostate gland morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic forelimb morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    endothelial cell fate specification IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    endothelial cell morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    inner ear development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    male genitalia development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of mesenchymal cell apoptotic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of mitotic nuclear division IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of BMP signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    tissue homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    vasculogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    ventricular septum development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    homeobox protein Hox-A13
    Names
    homeobox protein Hox-1.10
    hypodactyly

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008264.1NP_032290.1  homeobox protein Hox-A13

      See identical proteins and their annotated locations for NP_032290.1

      Status: VALIDATED

      Source sequence(s)
      U59322
      UniProtKB/Swiss-Prot
      Q62424
      Conserved Domains (2) summary
      smart00389
      Location:320376
      HOX; Homeodomain
      pfam12284
      Location:151220
      HoxA13_N; Hox protein A13 N terminal

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      52258853..52260880 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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