Format

Send to:

Choose Destination
    • Showing Current items.

    Epyc epiphycan [ Mus musculus (house mouse) ]

    Gene ID: 13516, updated on 22-May-2018

    Summary

    Official Symbol
    Epycprovided by MGI
    Official Full Name
    epiphycanprovided by MGI
    Primary source
    MGI:MGI:107942
    See related
    Ensembl:ENSMUSG00000019936 Vega:OTTMUSG00000024039
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dspg3; PG-Lb; SLRR3B
    Expression
    Biased expression in limb E14.5 (RPKM 25.0), testis adult (RPKM 5.6) and 1 other tissue See more
    Orthologs

    Genomic context

    See Epyc in Genome Data Viewer
    Location:
    10 C3; 10 50.35 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (97644068..97681900)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (97106702..97144534)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40749 Neighboring gene keratocan Neighboring gene predicted gene 10754 Neighboring gene RIKEN cDNA 4930525C09 gene Neighboring gene coiled-coil glutamate-rich protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    epiphycan
    Names
    dermatan sulfate proteoglycan 3
    dermatan sulphate proteoglycan 3
    proteoglycan-Lb
    small chondroitin/dermatan sulfate proteoglycan

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007884.2NP_031910.1  epiphycan precursor

      See identical proteins and their annotated locations for NP_031910.1

      Status: PROVISIONAL

      Source sequence(s)
      AK015223
      Consensus CDS
      CCDS24143.1
      UniProtKB/Swiss-Prot
      P70186
      Related
      ENSMUSP00000020094.1, OTTMUSP00000028521, ENSMUST00000020094.7, OTTMUST00000058777
      Conserved Domains (4) summary
      smart00013
      Location:121147
      LRRNT; Leucine rich repeat N-terminal domain
      cd00116
      Location:168270
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:145168
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:169223
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      97644068..97681900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center