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    Bnc1 basonuclin 1 [ Mus musculus (house mouse) ]

    Gene ID: 12173, updated on 27-Jan-2018
    Official Symbol
    Bnc1provided by MGI
    Official Full Name
    basonuclin 1provided by MGI
    Primary source
    MGI:MGI:1097164
    See related
    Ensembl:ENSMUSG00000025105 Vega:OTTMUSG00000059204
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bnc; AI047752; AW546376
    Expression
    Broad expression in ovary adult (RPKM 1.4), placenta adult (RPKM 1.2) and 18 other tissues See more
    Orthologs
    Location:
    7; 7 D3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (81966657..81992299, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (89111548..89137185, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 32695 Neighboring gene transmembrane 6 superfamily member 1 Neighboring gene HDGF like 3 Neighboring gene predicted gene, 46013 Neighboring gene predicted gene, 20744 Neighboring gene predicted gene, 32850

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of epithelial cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription by RNA polymerase I IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    wound healing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    zinc finger protein basonuclin-1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007562.2NP_031588.2  zinc finger protein basonuclin-1

      See identical proteins and their annotated locations for NP_031588.2

      Status: VALIDATED

      Source sequence(s)
      AC161216, AK051041, AK087567, BY146829
      Consensus CDS
      CCDS52285.1
      UniProtKB/TrEMBL
      F8VPY0
      Related
      ENSMUSP00000026096.7, OTTMUSP00000075710, ENSMUST00000026096.8, OTTMUST00000145285
      Conserved Domains (1) summary
      sd00017
      Location:356377
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      81966657..81992299 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011250781.2XP_011249083.1  zinc finger protein basonuclin-1 isoform X1

      Conserved Domains (1) summary
      sd00017
      Location:354375
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_011250782.1XP_011249084.1  zinc finger protein basonuclin-1 isoform X2

      Conserved Domains (1) summary
      sd00017
      Location:350371
      ZF_C2H2; C2H2 Zn finger [structural motif]
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