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    denr density-regulated protein [ Seriola dumerili (greater amberjack) ]

    Gene ID: 111217861, updated on 15-Mar-2024

    Summary

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    Gene symbol
    denr
    Gene description
    density-regulated protein
    See related
    Ensembl:ENSSDUG00000023551
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Seriola dumerili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
    Orthologs
    human zebrafish all
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    Genomic context

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    See denr in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174302.1 (836839..842777)

    NW_019174302.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C2orf42 homolog Neighboring gene nucleolysin TIA-1-like Neighboring gene hydroxycarboxylic acid receptor 3-like Neighboring gene CAP-GLY domain containing linker protein 1b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019174302 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formation of translation preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation reinitiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    density-regulated protein
    Names
    density regulated re-initiation and release factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sdu_1.0 Primary Assembly

    Genomic

    1. NW_019174302.1 Reference Sdu_1.0 Primary Assembly

      Range
      836839..842777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022739872.1 → XP_022595593.1  density-regulated protein

      UniProtKB/TrEMBL
      A0A3B4VP05, A0A3B4VQ92
      Related
      ENSSDUP00000032767.1, ENSSDUT00000033328.1
      Conserved Domains (1) summary
      TIGR01159
      Location:27 → 194
      DRP1; density-regulated protein DRP1

    2. XM_022739873.1 → XP_022595594.1  density-regulated protein

      UniProtKB/TrEMBL
      A0A3B4VP05, A0A3B4VQ92
      Related
      ENSSDUP00000032768.1, ENSSDUT00000033330.1
      Conserved Domains (1) summary
      TIGR01159
      Location:27 → 194
      DRP1; density-regulated protein DRP1
    Nucleotide Protein
    Heading Accession and Version

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