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    Prr9 proline rich 9 [ Mus musculus (house mouse) ]

    Gene ID: 109314, updated on 23-May-2018

    Summary

    Official Symbol
    Prr9provided by MGI
    Official Full Name
    proline rich 9provided by MGI
    Primary source
    MGI:MGI:1925680
    See related
    Ensembl:ENSMUSG00000056270 Vega:OTTMUSG00000052636
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A030004J04Rik
    Expression
    Low expression observed in reference dataset See more
    Orthologs

    Genomic context

    See Prr9 in Genome Data Viewer
    Location:
    3; 3 F1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (92122204..92123947, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (91926126..91927869, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene peptidoglycan recognition protein 3 Neighboring gene macrophage migration inhibitory factor, pseudogene 3 Neighboring gene loricrin Neighboring gene late cornified envelope-like proline-rich 1 Neighboring gene predicted gene, 35439

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural molecule activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    keratinocyte differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    peptide cross-linking IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cornified envelope IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175424.3NP_780633.1  proline-rich protein 9

      See identical proteins and their annotated locations for NP_780633.1

      Status: VALIDATED

      Source sequence(s)
      AK079463, BY454445
      Consensus CDS
      CCDS38508.1
      UniProtKB/Swiss-Prot
      Q8BV84
      Related
      ENSMUSP00000068470.3, OTTMUSP00000070429, ENSMUST00000070284.3, OTTMUST00000131882
      Conserved Domains (1) summary
      pfam02389
      Location:4108
      Cornifin; Cornifin (SPRR) family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      92122204..92123947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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