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    LOC101731775 integrin alpha-D [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 101731775, updated on 20-Jun-2018

    Summary

    Gene symbol
    LOC101731775
    Gene description
    integrin alpha-D
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana

    Genomic context

    See LOC101731775 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (6777760..6806815)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668244.1 (87928770..87957823)

    Chromosome 9 - NC_030685.1Genomic Context describing neighboring genes Neighboring gene integrin subunit alpha D Neighboring gene integrin alpha-M Neighboring gene integrin alpha-X Neighboring gene similar to RAB35, member RAS oncogene family

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Cell adhesion molecules (CAMs), organism-specific biosystem (from KEGG)
      Cell adhesion molecules (CAMs), organism-specific biosystemCell adhesion molecules are (glyco)proteins expressed on the cell surface and play a critical role in a wide array of biologic processes that include hemostasis, the immune response, inflammation, em...
    • Cell adhesion molecules (CAMs), conserved biosystem (from KEGG)
      Cell adhesion molecules (CAMs), conserved biosystemCell adhesion molecules are (glyco)proteins expressed on the cell surface and play a critical role in a wide array of biologic processes that include hemostasis, the immune response, inflammation, em...
    • Phagosome, organism-specific biosystem (from KEGG)
      Phagosome, organism-specific biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...
    • Phagosome, conserved biosystem (from KEGG)
      Phagosome, conserved biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...
    • Regulation of actin cytoskeleton, organism-specific biosystem (from KEGG)
      Regulation of actin cytoskeleton, organism-specific biosystem
      Regulation of actin cytoskeleton
    • Regulation of actin cytoskeleton, conserved biosystem (from KEGG)
      Regulation of actin cytoskeleton, conserved biosystem
      Regulation of actin cytoskeleton

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030685.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      6777760..6806815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004918150.3XP_004918207.1  integrin alpha-D isoform X1

      Conserved Domains (4) summary
      smart00191
      Location:525577
      Int_alpha; Integrin alpha (beta-propellor repeats)
      pfam00357
      Location:11191132
      Integrin_alpha; Integrin alpha cytoplasmic region
      pfam08441
      Location:620964
      Integrin_alpha2; Integrin alpha
      cl00057
      Location:150321
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    2. XM_012971364.2XP_012826818.1  integrin alpha-D isoform X2

      Conserved Domains (4) summary
      smart00191
      Location:501553
      Int_alpha; Integrin alpha (beta-propellor repeats)
      pfam00357
      Location:10951108
      Integrin_alpha; Integrin alpha cytoplasmic region
      pfam08441
      Location:596940
      Integrin_alpha2; Integrin alpha
      cl00057
      Location:150321
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
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