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    RPS4Y1 ribosomal protein S4 Y-linked 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 100270700, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RPS4Y1provided by VGNC
    Official Full Name
    ribosomal protein S4 Y-linked 1provided by VGNC
    Primary source
    VGNC:VGNC:101431
    See related
    Ensembl:ENSMMUG00000038331
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human all
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    Genomic context

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    See RPS4Y1 in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) Y NC_027914.1 (122137..147116)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) Y NC_027914.1 (122137..147100)

    Chromosome Y - NC_027914.1Genomic Context describing neighboring genes Neighboring gene ribonuclease H2 subunit C pseudogene Neighboring gene sex determining region Y Neighboring gene heat shock transcription factor, Y-linked-like Neighboring gene nucleosome assembly protein 1-like 1 Neighboring gene uncharacterized LOC114672378

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS4, Y isoform 1; 40S ribosomal protein S4, Y

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265745.1 → NP_001252674.1  small ribosomal subunit protein eS4, Y isoform 1

      See identical proteins and their annotated locations for NP_001252674.1

      Status: PROVISIONAL

      Source sequence(s)
      JV564981
      UniProtKB/TrEMBL
      B8YE07, H9FY67, I2CTN1
      Related
      ENSMMUP00000069580.1, ENSMMUT00000096656.1
      Conserved Domains (6) summary
      PLN00036
      Location:1 → 260
      PLN00036; 40S ribosomal protein S4; Provisional
      smart00363
      Location:44 → 95
      S4; S4 RNA-binding domain
      cd06087
      Location:175 → 229
      KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
      pfam00900
      Location:95 → 169
      Ribosomal_S4e; Ribosomal family S4e
      pfam08071
      Location:3 → 39
      RS4NT; RS4NT (NUC023) domain
      pfam16121
      Location:212 → 259
      40S_S4_C; 40S ribosomal protein S4 C-terminus

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_027914.1 Reference Mmul_10 Primary Assembly

      Range
      122137..147116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845188.1 → XP_028701021.1  40S ribosomal protein S4, Y isoform X1

      UniProtKB/TrEMBL
      A0A1D5QZT2, H9F544
      Related
      ENSMMUP00000053565.2, ENSMMUT00000063502.2
      Conserved Domains (1) summary
      PLN00036
      Location:1 → 242
      PLN00036; 40S ribosomal protein S4; Provisional
    Nucleotide Protein
    Heading Accession and Version

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