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    smg9 SMG9 nonsense mediated mRNA decay factor [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100216177, updated on 20-Jun-2018

    Summary

    Symbol
    smg9provided by Xenbase
    Full Name
    SMG9 nonsense mediated mRNA decay factorprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-990837
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    c19orf61
    Orthologs

    Genomic context

    See smg9 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (112912167..112924842, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668240.1 (117471761..117484435, complement)

    Chromosome 7 - NC_030683.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 554 Neighboring gene heat shock protein family A (Hsp70) member 1A Neighboring gene uncharacterized LOC100488359 Neighboring gene phospholipase A2 inhibitor and Ly6/PLAUR domain-containing protein-like

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    protein SMG9
    Names
    Protein smg-9 homolog
    smg-9 homolog, nonsense mediated mRNA decay factor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142146.1NP_001135618.1  protein SMG9

      See identical proteins and their annotated locations for NP_001135618.1

      Status: PROVISIONAL

      Source sequence(s)
      BC168445
      UniProtKB/Swiss-Prot
      B5DDX6
      Conserved Domains (1) summary
      cl23716
      Location:389420
      metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030683.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      112912167..112924842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012966229.2XP_012821683.1  protein SMG9 isoform X1

      See identical proteins and their annotated locations for XP_012821683.1

      UniProtKB/Swiss-Prot
      B5DDX6
      Conserved Domains (1) summary
      cl23716
      Location:389420
      metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
    2. XM_012966230.2XP_012821684.1  protein SMG9 isoform X1

      See identical proteins and their annotated locations for XP_012821684.1

      UniProtKB/Swiss-Prot
      B5DDX6
      Conserved Domains (1) summary
      cl23716
      Location:389420
      metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
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