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    atg13 autophagy related 13 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100125026, updated on 20-Jun-2018

    Summary

    Symbol
    atg13provided by Xenbase
    Full Name
    autophagy related 13provided by Xenbase
    Primary source
    Xenbase:XB-GENE-960599
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    harbi1; kiaa0652
    Orthologs

    Genomic context

    See atg13 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (5015178..5040965, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668236.1 (10452441..10478099)

    Chromosome 4 - NC_030680.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 1 Neighboring gene SPRY domain-containing SOCS box protein 3-like Neighboring gene harbinger transposase derived 1 Neighboring gene autophagy/beclin-1 regulator 1

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Autophagy - animal, organism-specific biosystem (from KEGG)
      Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - animal, conserved biosystem (from KEGG)
      Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - other, organism-specific biosystem (from KEGG)
      Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Autophagy - other, conserved biosystem (from KEGG)
      Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Cellular responses to stress, organism-specific biosystem (from REACTOME)
      Cellular responses to stress, organism-specific biosystemcomputationally inferred pathway (not manually curated)
    • Macroautophagy, organism-specific biosystem (from REACTOME)
      Macroautophagy, organism-specific biosystemcomputationally inferred pathway (not manually curated)

    General gene information

    Homology

    General protein information

    Preferred Names
    autophagy-related protein 13
    Names
    ATG13 autophagy related 13 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102950.1NP_001096420.1  autophagy-related protein 13

      See identical proteins and their annotated locations for NP_001096420.1

      Status: PROVISIONAL

      Source sequence(s)
      BC136085
      UniProtKB/Swiss-Prot
      A4IIM9
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030680.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      5015178..5040965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012960477.2XP_012815931.1  autophagy-related protein 13 isoform X2

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    2. XM_012960476.2XP_012815930.1  autophagy-related protein 13 isoform X1

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    3. XM_012960478.2XP_012815932.1  autophagy-related protein 13 isoform X3

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
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