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    STK40 serine/threonine kinase 40 [ Homo sapiens (human) ]

    Gene ID: 83931, updated on 5-Sep-2021

    Summary

    Official Symbol
    STK40provided by HGNC
    Official Full Name
    serine/threonine kinase 40provided by HGNC
    Primary source
    HGNC:HGNC:21373
    See related
    Ensembl:ENSG00000196182 MIM:609437
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SHIK; SgK495
    Expression
    Ubiquitous expression in testis (RPKM 28.4), ovary (RPKM 17.2) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See STK40 in Genome Data Viewer
    Location:
    1p34.3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109.20210514 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (36339628..36385924, complement)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (36805229..36851525, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene Sharpr-MPRA regulatory region 2392 Neighboring gene SH3 domain containing 21 Neighboring gene eva-1 homolog B Neighboring gene Sharpr-MPRA regulatory region 4421 Neighboring gene RNA, U4 small nuclear 27, pseudogene Neighboring gene LSM10, U7 small nuclear RNA associated

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Pr55(Gag) gag The amplified luminescent proximity homogeneous assay (AlphaScreen) identifies the interaction of HIV-1 Gag with SgK495 PubMed

    Go to the HIV-1, Human Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Potential readthrough

    Included gene: LSM10

    Homology

    Clone Names

    • MGC4796, 2310004N11Rik, RP11-268J15.4

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein serine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in glycogen metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in lung alveolus development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in lung morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in multicellular organism growth IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of MAPK cascade IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in respiratory system process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     

    General protein information

    Preferred Names
    serine/threonine-protein kinase 40
    Names
    SINK-homologous serine/threonine-protein kinase
    Ser/Thr-like kinase
    sugen kinase 495
    NP_001269475.1
    NP_001269476.1
    NP_114406.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001282546.2NP_001269475.1  serine/threonine-protein kinase 40 isoform 1

      See identical proteins and their annotated locations for NP_001269475.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AL834137, BC008344, DA375448
      Consensus CDS
      CCDS60089.1
      UniProtKB/Swiss-Prot
      Q8N2I9
      Related
      ENSP00000362222.3, ENST00000373130.7
      Conserved Domains (1) summary
      cd13974
      Location:43335
      STKc_SHIK; Catalytic domain of the Serine/Threonine kinase, SINK-homologous inhibitory kinase
    2. NM_001282547.2NP_001269476.1  serine/threonine-protein kinase 40 isoform 2

      See identical proteins and their annotated locations for NP_001269476.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1. Both variants 2 and 3 encode the same isoform.
      Source sequence(s)
      BC007835, DA375448
      Consensus CDS
      CCDS407.1
      UniProtKB/Swiss-Prot
      Q8N2I9
      Related
      ENSP00000362224.4, ENST00000373132.4
      Conserved Domains (1) summary
      cd13974
      Location:38330
      STKc_SHIK; Catalytic domain of the Serine/Threonine kinase, SINK-homologous inhibitory kinase
    3. NM_032017.3NP_114406.1  serine/threonine-protein kinase 40 isoform 2

      See identical proteins and their annotated locations for NP_114406.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1. Both variants 2 and 3 encode the same isoform.
      Source sequence(s)
      AL834137, DA375448
      Consensus CDS
      CCDS407.1
      UniProtKB/Swiss-Prot
      Q8N2I9
      Related
      ENSP00000362221.3, ENST00000373129.7
      Conserved Domains (1) summary
      cd13974
      Location:38330
      STKc_SHIK; Catalytic domain of the Serine/Threonine kinase, SINK-homologous inhibitory kinase

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

      Range
      36339628..36385924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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