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    Rps2 ribosomal protein S2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 83789, updated on 2-Oct-2018

    Summary

    Official Symbol
    Rps2provided by RGD
    Official Full Name
    ribosomal protein S2provided by RGD
    Primary source
    RGD:619887
    See related
    Ensembl:ENSRNOG00000014179
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rps2r1
    Summary
    40S ribosomal subunit protein [RGD, Feb 2006]
    Expression
    Biased expression in Spleen (RPKM 5380.6), Thymus (RPKM 4322.0) and 9 other tissues See more
    Orthologs

    Genomic context

    See Rps2 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (14088171..14090020)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (13903899..13905748)

    Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene transducin (beta)-like 3 Neighboring gene ring finger protein 151 Neighboring gene NADH:ubiquinone oxidoreductase subunit B10 Neighboring gene ribosomal protein L3-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    fibroblast growth factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    mRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein-containing complex binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    cellular response to interleukin-4 IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to interleukin-4 ISO
    Inferred from Sequence Orthology
    more info
     
    formation of translation preinitiation complex IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of ubiquitin-protein transferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    response to ethanol IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    ribosomal small subunit assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    NOT nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    ribonucleoprotein complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synapse IEA
    Inferred from Electronic Annotation
    more info
     
    synapse ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_031838.3NP_114026.3  40S ribosomal protein S2

      See identical proteins and their annotated locations for NP_114026.3

      Status: PROVISIONAL

      Source sequence(s)
      AI713815, CB324420, CD372915
      UniProtKB/Swiss-Prot
      P27952
      Related
      ENSRNOP00000019508.3, ENSRNOT00000019508.6
      Conserved Domains (1) summary
      PTZ00070
      Location:54273
      PTZ00070; 40S ribosomal protein S2; Provisional

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

      Range
      14088171..14090020
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000078.1 Alternate Rn_Celera

      Range
      13427034..13428883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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