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    HDA05 histone deacetylase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836227, updated on 18-Apr-2019

    Summary

    Gene symbol
    HDA05
    Gene description
    histone deacetylase 5
    Primary source
    Araport:AT5G61060
    Locus tag
    AT5G61060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATHDA5; HDA5; histone deacetylase 5; MAF19.7; MAF19_7
    Summary
    Encodes a member of the histone deacetylase family.

    Genomic context

    See HDA05 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (24566783..24571072, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein 3 Neighboring gene hypothetical protein Neighboring gene histone deacetylase-related / HD-like protein Neighboring gene histone deacetylase of the RPD3/HDA1 superfamily 18 Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001203654.1
    NM_125499.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    NAD-dependent histone deacetylase activity (H3-K14 specific) IEA
    Inferred from Electronic Annotation
    more info
     
    histone deacetylase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    histone deacetylation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    histone deacetylase 5
    NP_001190583.1
    • histone deacetylase 5 (HDA05); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase of the RPD3/HDA1 superfamily 18 (TAIR:AT5G61070.1).
    NP_200914.2
    • histone deacetylase 5 (HDA05); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase of the RPD3/HDA1 superfamily 18 (TAIR:AT5G61070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24566783..24571072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203654.1NP_001190583.1  histone deacetylase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190583.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K1Z5
      Conserved Domains (1) summary
      cl17011
      Location:31388
      Arginase_HDAC; Arginase-like and histone-like hydrolases
    2. NM_125499.5NP_200914.2  histone deacetylase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200914.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RX28
      Conserved Domains (1) summary
      cl17011
      Location:31384
      Arginase_HDAC; Arginase-like and histone-like hydrolases
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