Format

Send to:

Choose Destination
    • Showing Current items.

    GPX6 glutathione peroxidase 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826765, updated on 11-Oct-2018

    Summary

    Gene symbol
    GPX6
    Gene description
    glutathione peroxidase 6
    Primary source
    Araport:AT4G11600
    Locus tag
    AT4G11600
    Gene type
    protein coding
    RNA name
    glutathione peroxidase 6
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGPX6; glutathione peroxidase 6; LSC803; PHGPX; T5C23.30; T5C23_30
    Summary
    Encodes glutathione peroxidase.

    Genomic context

    See GPX6 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (7009769..7011406, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene RNI-like superfamily protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene ncRNA Neighboring gene C2 calcium/lipid-binding plant phosphoribosyltransferase family protein

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    NM_117229.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    glutathione peroxidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    phospholipid-hydroperoxide glutathione peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular oxidant detoxification ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    oxidation-reduction process ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    response to cadmium ion IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
     
    response to salt stress IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    apoplast IDA
    Inferred from Direct Assay
    more info
    PubMed 
    chloroplast IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol TAS
    Traceable Author Statement
    more info
    PubMed 
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion ISM
    Inferred from Sequence Model
    more info
     
    mitochondrion TAS
    Traceable Author Statement
    more info
    PubMed 
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    glutathione peroxidase 6
    NP_192897.2
    • glutathione peroxidase 6 (GPX6); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to salt stress, response to metal ion; LOCATED IN: cytosol, mitochondrion, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: glutathione peroxidase 7 (TAIR:AT4G31870.1); Has 7601 Blast hits to 7600 proteins in 1766 species: Archae - 2; Bacteria - 3728; Metazoa - 790; Fungi - 210; Plants - 383; Viruses - 8; Other Eukaryotes - 2480 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7009769..7011406 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117229.4NP_192897.2  glutathione peroxidase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192897.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48646
      Conserved Domains (2) summary
      pfam00578
      Location:75210
      AhpC-TSA; AhpC/TSA family
      cl00388
      Location:66229
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    Support Center