Format

Send to:

Choose Destination
    • Showing Current items.

    AT2G34970 Trimeric LpxA-like enzyme [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818061, updated on 12-Aug-2018

    Summary

    Gene symbol
    AT2G34970
    Gene description
    Trimeric LpxA-like enzyme
    Primary source
    Araport:AT2G34970
    Locus tag
    AT2G34970
    Gene type
    protein coding
    RNA name
    Trimeric LpxA-like enzyme
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19I3.20; F19I3_20

    Genomic context

    See AT2G34970 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (14746236..14748783)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA Neighboring gene cationic amino acid transporter 5 Neighboring gene phosphatidylinositolglycan synthase family protein Neighboring gene tRNA

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    NM_129049.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    guanyl-nucleotide exchange factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translation initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translation initiation factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    translation initiation factor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    regulation of translational initiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    translational initiation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISM
    Inferred from Sequence Model
    more info
     
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    eukaryotic translation initiation factor 2B complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    Trimeric LpxA-like enzyme
    NP_181042.1
    • Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT4G18300.1); Has 8121 Blast hits to 7961 proteins in 1548 species: Archae - 574; Bacteria - 3735; Metazoa - 1296; Fungi - 469; Plants - 387; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14746236..14748783
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129049.3NP_181042.1  Trimeric LpxA-like enzyme [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181042.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O64760
      Conserved Domains (4) summary
      cd05787
      Location:348426
      LbH_eIF2B_epsilon; eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is ...
      cd04197
      Location:25246
      eIF-2B_epsilon_N; The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2
      cd11558
      Location:550714
      W2_eIF2B_epsilon; C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon
      COG1208
      Location:26425
      GCD1; NDP-sugar pyrophosphorylase, includes eIF-2Bgamma, eIF-2Bepsilon, and LPS biosynthesis proteins [Translation, ribosomal structure and biogenesis, Cell wall/membrane/envelope biogenesis]
    Support Center