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    cabp4 calcium binding protein 4 [ Danio rerio (zebrafish) ]

    Gene ID: 797905, updated on 1-Aug-2018

    Summary

    Official Symbol
    cabp4provided by ZNC
    Official Full Name
    calcium binding protein 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-291
    See related
    Ensembl:ENSDARG00000008866
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    si:ch73-56f16.1

    Genomic context

    See cabp4 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (13794782..13823146, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (13757067..13785462, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene aurora kinase-like Neighboring gene LON peptidase N-terminal domain and ring finger 1, like Neighboring gene double C2-like domains, delta Neighboring gene serpin peptidase inhibitor, clade G (C1 inhibitor), member 1

    Genomic regions, transcripts, and products

    General gene information

    Homology

    • Homologs of the cabp4 gene: The cabp4 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, and frog.

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    calcium-binding protein 4
    Names
    cabp4a

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328057.1NP_001314986.1  calcium-binding protein 4

      Status: VALIDATED

      Source sequence(s)
      EH443700
      Related
      ENSDARP00000143613.2, ENSDART00000177174.2
      Conserved Domains (3) summary
      cd00051
      Location:164227
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:165223
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:91148
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      13794782..13823146 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005166913.4XP_005166970.1  calcium-binding protein 4 isoform X3

      Conserved Domains (3) summary
      cd00051
      Location:163226
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:164222
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:90147
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    2. XM_021478326.1XP_021334001.1  calcium-binding protein 4 isoform X2

      Conserved Domains (1) summary
      cl25352
      Location:129264
      EFh_PEF; The penta-EF hand (PEF) family
    3. XM_021478325.1XP_021334000.1  calcium-binding protein 4 isoform X1

      Conserved Domains (1) summary
      cl25352
      Location:130265
      EFh_PEF; The penta-EF hand (PEF) family
    4. XM_009303826.3XP_009302101.1  calcium-binding protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A286Y9G4
      Conserved Domains (2) summary
      cd00051
      Location:53116
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:54112
      EF-hand_7; EF-hand domain pair
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