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    rufy3 RUN and FYVE domain containing 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 779660, updated on 20-Jun-2018

    Summary

    Official Symbol
    rufy3provided by Xenbase
    Official Full Name
    RUN and FYVE domain containing 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1020955
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ripx; singar1
    Orthologs

    Genomic context

    See rufy3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (69606442..69662261, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (145626639..145682467)

    Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene deoxycytidine kinase, gene 1 Neighboring gene MOB kinase activator 1B Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1K

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Clone Names

    • MGC145963

    General protein information

    Preferred Names
    protein RUFY3
    Names
    rap2 interacting protein x

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078746.1NP_001072214.1  protein RUFY3

      See identical proteins and their annotated locations for NP_001072214.1

      Status: PROVISIONAL

      Source sequence(s)
      BC118783
      UniProtKB/TrEMBL
      Q0VFL6
      Conserved Domains (2) summary
      pfam02759
      Location:103224
      RUN; RUN domain
      cl25732
      Location:254464
      SMC_N; RecF/RecN/SMC N terminal domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      69606442..69662261 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012964907.2XP_012820361.1  protein RUFY3 isoform X2

      Conserved Domains (5) summary
      cd15744
      Location:674722
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam01442
      Location:365538
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:194317
      RUN; RUN domain
      cl12013
      Location:400580
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl19252
      Location:298394
      MreC; rod shape-determining protein MreC
    2. XM_018094279.1XP_017949768.1  protein RUFY3 isoform X4

    3. XM_012964921.2XP_012820375.1  protein RUFY3 isoform X5

      Conserved Domains (5) summary
      cd15744
      Location:583631
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam01442
      Location:274447
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:103226
      RUN; RUN domain
      cl12013
      Location:309489
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl19252
      Location:207303
      MreC; rod shape-determining protein MreC
    4. XM_018094275.1XP_017949764.1  protein RUFY3 isoform X3

    5. XM_018094266.1XP_017949755.1  protein RUFY3 isoform X1

    6. XM_012964924.2XP_012820378.1  protein RUFY3 isoform X6

      Conserved Domains (5) summary
      cd15744
      Location:567615
      FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
      pfam01442
      Location:258431
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam02759
      Location:87210
      RUN; RUN domain
      cl12013
      Location:293473
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl19252
      Location:191287
      MreC; rod shape-determining protein MreC
    7. XM_012964956.2XP_012820410.1  protein RUFY3 isoform X7

      Conserved Domains (3) summary
      pfam02759
      Location:121244
      RUN; RUN domain
      cl12013
      Location:327442
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl19252
      Location:225321
      MreC; rod shape-determining protein MreC
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