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    RORA RAR related orphan receptor A [ Pan troglodytes (chimpanzee) ]

    Gene ID: 747433, updated on 21-May-2019

    Summary

    Official Symbol
    RORAprovided by VGNC
    Official Full Name
    RAR related orphan receptor Aprovided by VGNC
    Primary source
    VGNC:VGNC:7524
    Locus tag
    CK820_G0008386
    See related
    Ensembl:ENSPTRG00000052707
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See RORA in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 15 NC_036894.1 (38944214..39684454, complement)
    104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 15 NC_006482.4 (41300197..42047583, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 15 NC_006482.3 (57865991..58617061, complement)

    Chromosome 15 - NC_036894.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S10 pseudogene Neighboring gene uncharacterized LOC107968493 Neighboring gene interactor of little elongation complex ELL subunit 2 Neighboring gene uncharacterized LOC107968498 Neighboring gene uncharacterized LOC104002330 Neighboring gene uncharacterized LOC107968495 Neighboring gene uncharacterized LOC107968496 Neighboring gene uncharacterized LOC107968494 Neighboring gene uncharacterized LOC107968497 Neighboring gene uncharacterized LOC112205550 Neighboring gene uncharacterized LOC107968500 Neighboring gene uncharacterized LOC104002332 Neighboring gene uncharacterized LOC112205596 Neighboring gene vacuolar protein sorting 13 homolog C

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Adipogenesis, organism-specific biosystem (from WikiPathways)
      Adipogenesis, organism-specific biosystemThe different classess of factors involved in adipogenesis are shown. Adipogenesis is the process by which fat cells differentiate from predadipocytes to adipocytes (fat cells). Adipose tissue, compo...
    • Circadian rhythm, organism-specific biosystem (from KEGG)
      Circadian rhythm, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Circadian rhythm, conserved biosystem (from KEGG)
      Circadian rhythm, conserved biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Inflammatory bowel disease (IBD), organism-specific biosystem (from KEGG)
      Inflammatory bowel disease (IBD), organism-specific biosystemInflammatory bowel disease (IBD), which includes Crohn disease (CD) and ulcerative colitis (UC), is characterized by chronic inflammation of the gastrointestinal tract due to environmental and geneti...
    • Inflammatory bowel disease (IBD), conserved biosystem (from KEGG)
      Inflammatory bowel disease (IBD), conserved biosystemInflammatory bowel disease (IBD), which includes Crohn disease (CD) and ulcerative colitis (UC), is characterized by chronic inflammation of the gastrointestinal tract due to environmental and geneti...
    • Nuclear Receptors, organism-specific biosystem (from WikiPathways)
      Nuclear Receptors, organism-specific biosystemNuclear receptors are a class of proteins found within the interior of cells that are responsible for sensing the presence of steroid and thyroid hormones and certain other molecules. In response, th...
    • Th17 cell differentiation, organism-specific biosystem (from KEGG)
      Th17 cell differentiation, organism-specific biosystemInterleukin (IL)-17-producing helper T (Th17) cells serve as a subset of CD4+ T cells involved in epithelial cell- and neutrophil mediated immune responses against extracellular microbes and in the p...
    • Th17 cell differentiation, conserved biosystem (from KEGG)
      Th17 cell differentiation, conserved biosystemInterleukin (IL)-17-producing helper T (Th17) cells serve as a subset of CD4+ T cells involved in epithelial cell- and neutrophil mediated immune responses against extracellular microbes and in the p...

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036894.1 Reference Clint_PTRv2 Primary Assembly

      Range
      38944214..39684454 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001173408.5XP_001173408.1  nuclear receptor ROR-alpha isoform X1

      See identical proteins and their annotated locations for XP_001173408.1

      Related
      ENSPTRP00000066023.1
      Conserved Domains (2) summary
      cd06939
      Location:272511
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cd06968
      Location:66160
      NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    2. XM_016927664.2XP_016783153.1  nuclear receptor ROR-alpha isoform X3

      Conserved Domains (2) summary
      cd06939
      Location:135374
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cl02596
      Location:123
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
    3. XM_016927663.2XP_016783152.1  nuclear receptor ROR-alpha isoform X2

      UniProtKB/TrEMBL
      K7BIT0
      Related
      ENSPTRP00000081573.1
      Conserved Domains (2) summary
      cd06939
      Location:217456
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cd06968
      Location:11105
      NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
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