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    ABCA6 ATP binding cassette subfamily A member 6 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 742817, updated on 7-Oct-2018

    Summary

    Official Symbol
    ABCA6provided by VGNC
    Official Full Name
    ATP binding cassette subfamily A member 6provided by VGNC
    Primary source
    VGNC:VGNC:6319
    Locus tag
    CK820_G0038058
    See related
    Ensembl:ENSPTRG00000009584
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See ABCA6 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 17 NC_036896.1 (62124262..62195390, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 17 NC_006484.3 (67842737..67906003, complement)

    Chromosome 17 - NC_036896.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily A member 8 Neighboring gene uncharacterized LOC107969309 Neighboring gene ATP binding cassette subfamily A member 9 Neighboring gene microRNA 4524a Neighboring gene ATP binding cassette subfamily A member 10 Neighboring gene ATP binding cassette subfamily A member 5 Neighboring gene small nuclear ribonucleoprotein G pseudogene Neighboring gene small nucleolar RNA SNORA40

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • ABC transporters, organism-specific biosystem (from KEGG)
      ABC transporters, organism-specific biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
    • ABC transporters, conserved biosystem (from KEGG)
      ABC transporters, conserved biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    ATP-binding cassette sub-family A member 6
    Names
    ATP-binding cassette, sub-family A (ABC1), member 6
    ATP-binding cassette, sub-family A, member 6

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036896.1 Reference Clint_PTRv2 Primary Assembly

      Range
      62124262..62195390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016932840.2XP_016788329.2  ATP-binding cassette sub-family A member 6 isoform X1

      Conserved Domains (1) summary
      cl28181
      Location:1741593
      AAA; ATPases associated with a variety of cellular activities
    2. XM_016932838.2XP_016788327.2  ATP-binding cassette sub-family A member 6 isoform X1

      Conserved Domains (1) summary
      cl28181
      Location:1741593
      AAA; ATPases associated with a variety of cellular activities
    3. XM_016932839.2XP_016788328.2  ATP-binding cassette sub-family A member 6 isoform X1

      Conserved Domains (1) summary
      cl28181
      Location:1741593
      AAA; ATPases associated with a variety of cellular activities
    4. XM_016932837.2XP_016788326.2  ATP-binding cassette sub-family A member 6 isoform X1

      Conserved Domains (1) summary
      cl28181
      Location:1741593
      AAA; ATPases associated with a variety of cellular activities
    5. XM_016932843.2XP_016788332.1  ATP-binding cassette sub-family A member 6 isoform X3

    6. XM_016932842.2XP_016788331.2  ATP-binding cassette sub-family A member 6 isoform X2

      Conserved Domains (1) summary
      cl28181
      Location:1741515
      AAA; ATPases associated with a variety of cellular activities
    7. XM_016932844.2XP_016788333.2  ATP-binding cassette sub-family A member 6 isoform X4

      Conserved Domains (2) summary
      cd03263
      Location:478701
      ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
      cl28181
      Location:1741384
      AAA; ATPases associated with a variety of cellular activities
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