Format

Send to:

Choose Destination
    • Showing Current items.

    FDFT1 farnesyl-diphosphate farnesyltransferase 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 740684, updated on 6-Oct-2018

    Summary

    Official Symbol
    FDFT1provided by VGNC
    Official Full Name
    farnesyl-diphosphate farnesyltransferase 1provided by VGNC
    Primary source
    VGNC:VGNC:3014
    Locus tag
    CK820_G0040359
    See related
    Ensembl:ENSPTRG00000019997
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See FDFT1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 8 NC_036887.1 (10779816..10830564)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 8 Unlocalized Scaffold NW_003468540.1 (3699226..3748488)

    Chromosome 8 - NC_036887.1Genomic Context describing neighboring genes Neighboring gene nei like DNA glycosylase 2 Neighboring gene activated RNA polymerase II transcriptional coactivator p15 pseudogene Neighboring gene cathepsin B Neighboring gene uncharacterized LOC107976197 Neighboring gene olfactory receptor 7E24-like Neighboring gene olfactory receptor 7E24-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    squalene synthase
    NP_001267081.1
    XP_009438497.1
    XP_009438500.1
    XP_009438501.1
    XP_009438502.1
    XP_024200733.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001280152.1NP_001267081.1  squalene synthase

      See identical proteins and their annotated locations for NP_001267081.1

      Status: PROVISIONAL

      Source sequence(s)
      AK305291
      UniProtKB/TrEMBL
      G2HEX7
      Conserved Domains (1) summary
      TIGR01559
      Location:38370
      squal_synth; farnesyl-diphosphate farnesyltransferase

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036887.1 Reference Clint_PTRv2 Primary Assembly

      Range
      10779816..10830564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024344965.1XP_024200733.1  squalene synthase isoform X2

      Conserved Domains (1) summary
      TIGR01559
      Location:38370
      squal_synth; farnesyl-diphosphate farnesyltransferase
    2. XM_009440226.3XP_009438501.1  squalene synthase isoform X3

      See identical proteins and their annotated locations for XP_009438501.1

      Conserved Domains (1) summary
      cl00210
      Location:1285
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
    3. XM_009440227.3XP_009438502.1  squalene synthase isoform X4

      See identical proteins and their annotated locations for XP_009438502.1

      Conserved Domains (1) summary
      cl00210
      Location:22203
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
    4. XM_009440222.3XP_009438497.1  squalene synthase isoform X1

      Related
      ENSPTRP00000087156.1
      Conserved Domains (1) summary
      TIGR01559
      Location:89421
      squal_synth; farnesyl-diphosphate farnesyltransferase
    5. XM_009440225.3XP_009438500.1  squalene synthase isoform X3

      See identical proteins and their annotated locations for XP_009438500.1

      Conserved Domains (1) summary
      cl00210
      Location:1285
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
    Support Center