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    PLAGL1 PLAG1 like zinc finger 1 [ Sus scrofa (pig) ]

    Gene ID: 733596, updated on 2-Oct-2018

    Summary

    Gene symbol
    PLAGL1
    Gene description
    PLAG1 like zinc finger 1
    See related
    Ensembl:ENSSSCG00000004127
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in subcutaneous adipose (RPKM 2.5), kidney (RPKM 2.2) and 7 other tissues See more
    Orthologs

    Genomic context

    See PLAGL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (21299830..21371070)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (23640710..23708147)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110259972 Neighboring gene syntaxin 11 Neighboring gene splicing factor 3b subunit 5 Neighboring gene zinc finger C2HC-type containing 1B Neighboring gene LTV1 ribosome biogenesis factor Neighboring gene phosphatase and actin regulator 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    zinc finger protein PLAGL1
    Names
    pleiomorphic adenoma gene-like 1
    pleiomorphic adenoma-like protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044545.1NP_001038010.1  zinc finger protein PLAGL1

      See identical proteins and their annotated locations for NP_001038010.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ288899
      UniProtKB/Swiss-Prot
      Q2I689
      UniProtKB/TrEMBL
      C0LN01
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      21299830..21371070
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021084039.1XP_020939698.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    2. XM_021084163.1XP_020939822.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    3. XM_021084053.1XP_020939712.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    4. XM_021084045.1XP_020939704.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    5. XM_021084184.1XP_020939843.1  zinc finger protein PLAGL1 isoform X2

      Related
      ENSSSCP00000042154.1, ENSSSCT00000060952.1
      Conserved Domains (4) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
      pfam15800
      Location:150276
      CiPC; Clock interacting protein circadian
    6. XM_021084064.1XP_020939723.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    7. XM_021084080.1XP_020939739.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    8. XM_021084087.1XP_020939746.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    9. XM_021084092.1XP_020939751.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    10. XM_013984762.2XP_013840216.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/Swiss-Prot
      Q2I689
      UniProtKB/TrEMBL
      C0LN01
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    11. XM_005654368.3XP_005654425.1  zinc finger protein PLAGL1 isoform X1

      See identical proteins and their annotated locations for XP_005654425.1

      UniProtKB/Swiss-Prot
      Q2I689
      UniProtKB/TrEMBL
      C0LN01
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    12. XM_013984759.2XP_013840213.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/Swiss-Prot
      Q2I689
      UniProtKB/TrEMBL
      C0LN01
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    13. XM_013984767.2XP_013840221.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/Swiss-Prot
      Q2I689
      UniProtKB/TrEMBL
      C0LN01
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    14. XM_021084067.1XP_020939726.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    15. XM_021084059.1XP_020939718.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    16. XM_021084192.1XP_020939851.1  zinc finger protein PLAGL1 isoform X2

      Conserved Domains (4) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
      pfam15800
      Location:150276
      CiPC; Clock interacting protein circadian
    17. XM_021084121.1XP_020939780.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    18. XM_005654371.3XP_005654428.1  zinc finger protein PLAGL1 isoform X1

      See identical proteins and their annotated locations for XP_005654428.1

      UniProtKB/Swiss-Prot
      Q2I689
      UniProtKB/TrEMBL
      C0LN01
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    19. XM_013984764.2XP_013840218.1  zinc finger protein PLAGL1 isoform X1

      UniProtKB/Swiss-Prot
      Q2I689
      UniProtKB/TrEMBL
      C0LN01
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    20. XM_021084171.1XP_020939830.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    21. XM_021084199.1XP_020939858.1  zinc finger protein PLAGL1 isoform X2

      Conserved Domains (4) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
      pfam15800
      Location:150276
      CiPC; Clock interacting protein circadian
    22. XM_021084176.1XP_020939835.1  zinc finger protein PLAGL1 isoform X1

      Related
      ENSSSCP00000035313.1, ENSSSCT00000058859.1
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    23. XM_021084114.1XP_020939773.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    24. XM_021084099.1XP_020939758.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    25. XM_021084128.1XP_020939787.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    26. XM_021084106.1XP_020939765.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    27. XM_021084156.1XP_020939815.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
    28. XM_021084182.1XP_020939841.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam15800
      Location:202328
      CiPC; Clock interacting protein circadian
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