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    C1QB complement C1q B chain [ Homo sapiens (human) ]

    Gene ID: 713, updated on 8-Jul-2021

    Summary

    Official Symbol
    C1QBprovided by HGNC
    Official Full Name
    complement C1q B chainprovided by HGNC
    Primary source
    HGNC:HGNC:1242
    See related
    Ensembl:ENSG00000173369 MIM:120570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This gene encodes the B-chain polypeptide of serum complement subcomponent C1q, which associates with C1r and C1s to yield the first component of the serum complement system. C1q is composed of 18 polypeptide chains which include 6 A-chains, 6 B-chains, and 6 C-chains. Each chain contains an N-terminal collagen-like region and a C-terminal C1q globular domain. C1q deficiency is associated with lupus erythematosus and glomerulonephritis. [provided by RefSeq, Dec 2016]
    Expression
    Broad expression in spleen (RPKM 482.2), lymph node (RPKM 181.6) and 15 other tissues See more
    Orthologs
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    Genomic context

    See C1QB in Genome Data Viewer
    Location:
    1p36.12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109.20210514 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (22653236..22661637)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (22979729..22988130)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene complement C1q A chain Neighboring gene complement C1q C chain Neighboring gene EPH receptor B2 Neighboring gene microRNA 4684 Neighboring gene microRNA 4253

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Envelope surface glycoprotein gp120 env Fibronectin, which is present in submandibular saliva, binds to HIV-1 gp120/160 and enhances the interaction of C1q with gp120/160 PubMed
    env Free C1q binds to HIV-1 gp120; digestion of the C1q stem portion with collagenase completely eliminates its binding to recombinant gp120, suggesting that the collagen-like stem region of C1q participates in the binding to gp120 PubMed
    Envelope transmembrane glycoprotein gp41 env The interaction between C1q and HIV-gp41 is dependent upon the presence of calcium; calcium can not be replaced by larger cations such as strontium, barium, lead or smaller ions such as magnesium and manganese PubMed
    env HIV-1 gp41 (amino acid residues 561-575, 591-605 and 601-620) binds to complement C1q and activates the C1 complex in a dose- and time-dependent manner PubMed
    env Three sites (amino acids 526-538, 590-613 and 625-655) of the cell-external part of HIV-1 gp41 bind both HIV-1 gp120 and C1q PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in complement activation TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in complement activation, classical pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in synapse pruning ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in blood microparticle HDA PubMed 
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
     
    located_in collagen-containing extracellular matrix HDA PubMed 
    part_of complement component C1 complex TAS
    Traceable Author Statement
    more info
    PubMed 
    located_in extracellular region TAS
    Traceable Author Statement
    more info
     
    located_in postsynapse ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in synapse ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    complement C1q subcomponent subunit B
    Names
    complement C1q chain B
    complement component 1, q subcomponent, B chain
    complement component 1, q subcomponent, beta polypeptide
    complement component C1q, B chain
    complement subcomponent C1q chain B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007283.1 RefSeqGene

      Range
      5001..13348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_23

    mRNA and Protein(s)

    1. NM_000491.5NP_000482.3  complement C1q subcomponent subunit B isoform 1 precursor

      See identical proteins and their annotated locations for NP_000482.3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AL158086
      Consensus CDS
      CCDS228.1
      UniProtKB/Swiss-Prot
      P02746
      UniProtKB/TrEMBL
      A0A024RAB9
      Conserved Domains (2) summary
      smart00110
      Location:115250
      C1Q; Complement component C1q domain
      pfam01391
      Location:3386
      Collagen; Collagen triple helix repeat (20 copies)
    2. NM_001371184.3NP_001358113.2  complement C1q subcomponent subunit B isoform 2 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes isoform 2
      Source sequence(s)
      AA838059, AI125081, BI489644, BQ711602, X03084
      Related
      ENSP00000404606.2, ENST00000432749.6
      Conserved Domains (2) summary
      smart00110
      Location:113248
      C1Q; Complement component C1q domain
      pfam01391
      Location:3786
      Collagen; Collagen triple helix repeat (20 copies)
    3. NM_001378156.1NP_001365085.1  complement C1q subcomponent subunit B isoform 2 precursor

      Status: REVIEWED

      Source sequence(s)
      AL158086
      Related
      ENSP00000423689.1, ENST00000509305.6
      Conserved Domains (2) summary
      smart00110
      Location:113248
      C1Q; Complement component C1q domain
      pfam01391
      Location:3786
      Collagen; Collagen triple helix repeat (20 copies)

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

      Range
      22653236..22661637
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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