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    COL16A1 collagen type XVI alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706149, updated on 3-Apr-2017

    Summary

    Gene symbol
    COL16A1
    Gene description
    collagen type XVI alpha 1 chain
    See related
    Ensembl:ENSMMUG00000023398
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs

    Genomic context

    See COL16A1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    72
    Annotation release Status Assembly Chr Location
    102 current Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (30705352..30756988, complement)
    Build 1.2 previous assembly Mmul_051212 (GCF_000002255.3) 1 NC_007858.1 (34409201..34461304, complement)

    Chromosome 1 - NC_027893.1Genomic Context describing neighboring genes Neighboring gene hypocretin receptor 1 Neighboring gene uncharacterized LOC106997476 Neighboring gene penta-EF-hand domain containing 1 Neighboring gene adhesion G protein-coupled receptor B2 Neighboring gene uncharacterized LOC106997348 Neighboring gene SPOC domain containing 1

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    collagen alpha-1(XVI) chain

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_8.0.1 Primary Assembly

    Genomic

    1. NC_027893.1 Reference Mmul_8.0.1 Primary Assembly

      Range
      30705352..30756988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015133801.1XP_014989287.1  collagen alpha-1(XVI) chain isoform X4

      Conserved Domains (2) summary
      pfam01391
      Location:768815
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
    2. XM_015133791.1XP_014989277.1  collagen alpha-1(XVI) chain isoform X3

      Conserved Domains (2) summary
      pfam01391
      Location:768815
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
    3. XM_015133783.1XP_014989269.1  collagen alpha-1(XVI) chain isoform X2

      Conserved Domains (2) summary
      pfam01391
      Location:768815
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
    4. XM_015133782.1XP_014989268.1  collagen alpha-1(XVI) chain isoform X1

      Related
      ENSMMUP00000030804.3, ENSMMUT00000032922.3
      Conserved Domains (2) summary
      pfam01391
      Location:768815
      Collagen; Collagen triple helix repeat (20 copies)
      smart00210
      Location:50231
      TSPN; Thrombospondin N-terminal -like domains
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