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    PRDM1 PR/SET domain 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696757, updated on 3-Apr-2017

    Summary

    Gene symbol
    PRDM1
    Gene description
    PR/SET domain 1
    Locus tag
    EGK_15204
    See related
    Ensembl:ENSMMUG00000021401
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs

    Genomic context

    See PRDM1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (104069494..104093536, complement)
    Build 1.2 previous assembly Mmul_051212 (GCF_000002255.3) 4 NC_007861.1 (102134339..102158201)

    Chromosome 4 - NC_027896.1Genomic Context describing neighboring genes Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene autophagy related 5 Neighboring gene chromatin assembly factor 1 subunit B pseudogene Neighboring gene 60S ribosomal protein L35 pseudogene Neighboring gene prolyl endopeptidase

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    PR domain zinc finger protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_8.0.1 Primary Assembly

    Genomic

    1. NC_027896.1 Reference Mmul_8.0.1 Primary Assembly

      Range
      104069494..104093536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015137020.1XP_014992506.1  PR domain zinc finger protein 1 isoform X2

      Conserved Domains (3) summary
      smart00317
      Location:100206
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      sd00017
      Location:591610
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:602627
      zf-H2C2_2; Zinc-finger double domain
    2. XM_001087708.3XP_001087708.1  PR domain zinc finger protein 1 isoform X1

      See identical proteins and their annotated locations for XP_001087708.1

      UniProtKB/TrEMBL
      F7FD48
      Related
      ENSMMUP00000028193.1, ENSMMUT00000030125.2
      Conserved Domains (5) summary
      smart00317
      Location:100206
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:570688
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:577597
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:575597
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:617642
      zf-H2C2_2; Zinc-finger double domain
    3. XM_015137021.1XP_014992507.1  PR domain zinc finger protein 1 isoform X4

      Conserved Domains (5) summary
      smart00317
      Location:148
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:412530
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:419439
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:417439
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:459484
      zf-H2C2_2; Zinc-finger double domain
    4. XM_002803849.2XP_002803895.1  PR domain zinc finger protein 1 isoform X3

      UniProtKB/TrEMBL
      F7GH30
      Related
      ENSMMUP00000033313.1, ENSMMUT00000040247.2
      Conserved Domains (5) summary
      smart00317
      Location:572
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:436554
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:443463
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:441463
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:483508
      zf-H2C2_2; Zinc-finger double domain
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