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    Sprr1b small proline-rich protein 1B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 685912, updated on 25-Sep-2018

    Summary

    Official Symbol
    Sprr1bprovided by RGD
    Official Full Name
    small proline-rich protein 1Bprovided by RGD
    Primary source
    RGD:1587862
    See related
    Ensembl:ENSRNOG00000031144
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Low expression observed in reference dataset See more
    Orthologs

    Genomic context

    See Sprr1b in Genome Data Viewer
    Location:
    2q34
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (192622972..192624848, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (212246504..212246941)

    Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene small proline rich protein 2F Neighboring gene small proline-rich protein 2H-like Neighboring gene uncharacterized LOC108350274 Neighboring gene small proline-rich protein 3 Neighboring gene small proline-rich protein 1A

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    protein binding, bridging ISO
    Inferred from Sequence Orthology
    more info
     
    structural molecule activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    keratinocyte differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    peptide cross-linking ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cornified envelope ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cornifin-B; LOW QUALITY PROTEIN: cornifin-B
    Names
    small proline-rich protein 1B (cornifin)

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

      Range
      192622972..192624848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001065728.3XP_001065728.1  cornifin-B

      UniProtKB/TrEMBL
      A0A0G2K2L3
      Related
      ENSRNOP00000072288.1, ENSRNOT00000040171.5
      Conserved Domains (1) summary
      pfam02389
      Location:17143
      Cornifin; Cornifin (SPRR) family

    Alternate Rn_Celera

    Genomic

    1. AC_000070.1 Alternate Rn_Celera

      Range
      172247602..172249482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002726009.4XP_002726055.3  LOW QUALITY PROTEIN: cornifin-B

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