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    Zscan2 zinc finger and SCAN domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 683603, updated on 2-Oct-2018

    Summary

    Official Symbol
    Zscan2provided by RGD
    Official Full Name
    zinc finger and SCAN domain containing 2provided by RGD
    Primary source
    RGD:1584548
    See related
    Ensembl:ENSRNOG00000022164
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Thymus (RPKM 25.4), Testes (RPKM 20.3) and 9 other tissues See more
    Orthologs

    Genomic context

    See Zscan2 in Genome Data Viewer
    Location:
    1q31
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (142679308..142695232)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (143630849..143646301)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene chromobox protein homolog 3 pseudogene Neighboring gene IQ motif containing GTPase activating protein 1 Neighboring gene WD repeat domain 73 Neighboring gene neuromedin B

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    negative regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    colocalizes_with nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger and SCAN domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      142679308..142695232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006229466.3XP_006229528.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_006229528.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    2. XM_008759593.2XP_008757815.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_008757815.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    3. XM_006229467.3XP_006229529.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_006229529.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    4. XM_008759592.2XP_008757814.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_008757814.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    5. XM_006229465.3XP_006229527.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_006229527.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    6. XM_003748890.4XP_003748938.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_003748938.1

      UniProtKB/TrEMBL
      F1M9Z0
      Related
      ENSRNOP00000029851.4, ENSRNOT00000034267.5
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      126887996..126902196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006223366.3XP_006223428.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_006223428.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    2. XM_008774599.2XP_008772821.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_008772821.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    3. XM_006223367.3XP_006223429.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_006223429.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    4. XM_008774598.2XP_008772820.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_008772820.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    5. XM_006223365.3XP_006223427.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_006223427.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    6. XM_001066711.6XP_001066711.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for XP_001066711.1

      UniProtKB/TrEMBL
      F1M9Z0
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69129
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
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