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    Pigf phosphatidylinositol glycan anchor biosynthesis, class F [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681086, updated on 21-Jul-2018

    Summary

    Official Symbol
    Pigfprovided by RGD
    Official Full Name
    phosphatidylinositol glycan anchor biosynthesis, class Fprovided by RGD
    Primary source
    RGD:1584658
    See related
    Ensembl:ENSRNOG00000015325
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Muscle (RPKM 164.6), Thymus (RPKM 159.1) and 9 other tissues See more
    Orthologs

    Genomic context

    See Pigf in Genome Data Viewer
    Location:
    6q12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (10565841..10593972, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 6 NC_005105.3 (20554358..20582471, complement)

    Chromosome 6 - NC_005105.4Genomic Context describing neighboring genes Neighboring gene transmembrane protein 247 Neighboring gene ATPase H+ transporting V1 subunit E2 Neighboring gene ras homolog family member Q Neighboring gene uncharacterized LOC108351171 Neighboring gene CXXC repeat containing interactor of PDZ3 domain Neighboring gene karyopherin alpha 2-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    GPI anchor biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    phosphatidylinositol-glycan biosynthesis class F protein
    XP_006225734.1
    XP_006225736.1
    XP_006239787.1
    XP_017449892.1
    XP_017449893.1
    XP_017449894.1
    XP_017449895.1
    XP_017458667.1
    XP_017458668.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005105.4 Reference Rnor_6.0 Primary Assembly

      Range
      10565841..10593972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017594404.1XP_017449893.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X2

      Related
      ENSRNOP00000020600.5, ENSRNOT00000020600.5
    2. XM_006239725.3XP_006239787.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X3

      Conserved Domains (1) summary
      pfam06699
      Location:21204
      PIG-F; GPI biosynthesis protein family Pig-F
    3. XM_017594405.1XP_017449894.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X3

      Conserved Domains (1) summary
      pfam06699
      Location:21204
      PIG-F; GPI biosynthesis protein family Pig-F
    4. XM_017594403.1XP_017449892.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X1

    5. XM_017594406.1XP_017449895.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X4

    RNA

    1. XR_001838269.1 RNA Sequence

    Alternate Rn_Celera

    Genomic

    1. AC_000074.1 Alternate Rn_Celera

      Range
      7325024..7353152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006225674.3XP_006225736.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X3

      See identical proteins and their annotated locations for XP_006225736.1

      Conserved Domains (1) summary
      pfam06699
      Location:21204
      PIG-F; GPI biosynthesis protein family Pig-F
    2. XM_017603179.1XP_017458668.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X4

    3. XM_017603178.1XP_017458667.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X2

    4. XM_006225672.3XP_006225734.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X1

      Conserved Domains (1) summary
      pfam06699
      Location:46229
      PIG-F; GPI biosynthesis protein family Pig-F

    RNA

    1. XR_001843870.1 RNA Sequence

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