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    becn1 beclin 1, autophagy related [ Takifugu rubripes (torafugu) ]

    Gene ID: 653027, updated on 15-Oct-2018

    Summary

    Gene symbol
    becn1
    Gene description
    beclin 1, autophagy related
    See related
    Ensembl:ENSTRUG00000019864
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Takifugu rubripes (gb-synonym: Fugu rubripes)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Also known as
    atg6
    Orthologs

    Genomic context

    See becn1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current FUGU5 (GCF_000180615.1) 1 NC_018890.1 (10133683..10137079, complement)

    Chromosome 1 - NC_018890.1Genomic Context describing neighboring genes Neighboring gene integrin subunit beta 3 Neighboring gene serine/threonine-protein kinase tousled-like 2 Neighboring gene microRNA 222 Neighboring gene microRNA 221

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_018890.1 Chromosome 1 Reference FUGU5 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Apelin signaling pathway, organism-specific biosystem (from KEGG)
      Apelin signaling pathway, organism-specific biosystemApelin is an endogenous peptide capable of binding the apelin receptor (APJ), which was originally described as an orphan G-protein-coupled receptor. Apelin and APJ are widely expressed in various ti...
    • Autophagy - animal, organism-specific biosystem (from KEGG)
      Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - animal, conserved biosystem (from KEGG)
      Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - other, organism-specific biosystem (from KEGG)
      Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Autophagy - other, conserved biosystem (from KEGG)
      Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Mitophagy - animal, organism-specific biosystem (from KEGG)
      Mitophagy - animal, organism-specific biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...
    • Mitophagy - animal, conserved biosystem (from KEGG)
      Mitophagy - animal, conserved biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037874.1NP_001032963.1  Beclin-1

      See identical proteins and their annotated locations for NP_001032963.1

      Status: PROVISIONAL

      Source sequence(s)
      AM051360
      UniProtKB/TrEMBL
      Q4A1K9
      Conserved Domains (2) summary
      pfam04111
      Location:132443
      APG6; Autophagy protein Apg6
      pfam15285
      Location:104126
      BH3; Beclin-1 BH3 domain, Bcl-2-interacting

    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference FUGU5 Primary Assembly

    Genomic

    1. NC_018890.1 Reference FUGU5 Primary Assembly

      Range
      10133683..10137079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011606026.1XP_011604328.1  beclin-1 isoform X1

      See identical proteins and their annotated locations for XP_011604328.1

      UniProtKB/TrEMBL
      Q4A1K9
      Conserved Domains (2) summary
      pfam04111
      Location:132443
      APG6; Autophagy protein Apg6
      pfam15285
      Location:104126
      BH3; Beclin-1 BH3 domain, Bcl-2-interacting
    2. XM_011606020.1XP_011604322.1  beclin-1 isoform X1

      See identical proteins and their annotated locations for XP_011604322.1

      UniProtKB/TrEMBL
      Q4A1K9
      Conserved Domains (2) summary
      pfam04111
      Location:132443
      APG6; Autophagy protein Apg6
      pfam15285
      Location:104126
      BH3; Beclin-1 BH3 domain, Bcl-2-interacting
    3. XM_011606011.1XP_011604313.1  beclin-1 isoform X1

      See identical proteins and their annotated locations for XP_011604313.1

      UniProtKB/TrEMBL
      Q4A1K9
      Related
      ENSTRUP00000051212.1, ENSTRUT00000051280.1
      Conserved Domains (2) summary
      pfam04111
      Location:132443
      APG6; Autophagy protein Apg6
      pfam15285
      Location:104126
      BH3; Beclin-1 BH3 domain, Bcl-2-interacting
    4. XM_011606030.1XP_011604332.1  beclin-1 isoform X1

      See identical proteins and their annotated locations for XP_011604332.1

      UniProtKB/TrEMBL
      Q4A1K9
      Conserved Domains (2) summary
      pfam04111
      Location:132443
      APG6; Autophagy protein Apg6
      pfam15285
      Location:104126
      BH3; Beclin-1 BH3 domain, Bcl-2-interacting
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