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    UPF3B UPF3B, regulator of nonsense mediated mRNA decay [ Bos taurus (cattle) ]

    Gene ID: 616181, updated on 27-Aug-2018

    Summary

    Official Symbol
    UPF3Bprovided by VGNC
    Official Full Name
    UPF3B, regulator of nonsense mediated mRNA decayprovided by VGNC
    Primary source
    VGNC:VGNC:36683
    See related
    Ensembl:ENSBTAG00000035615
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See UPF3B in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) X NC_037357.1 (4167940..4184434, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) X AC_000187.1 (4015326..4032314, complement)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA69 Neighboring gene ribosomal protein L39 Neighboring gene vasculin-like protein 1 pseudogene Neighboring gene oxysterol-binding protein-related protein 1 pseudogene Neighboring gene ring finger protein 113A Neighboring gene NADH:ubiquinone oxidoreductase subunit A1

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General protein information

    Preferred Names
    regulator of nonsense transcripts 3B
    Names
    UPF3 regulator of nonsense transcripts homolog B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076411.2NP_001069879.1  regulator of nonsense transcripts 3B

      See identical proteins and their annotated locations for NP_001069879.1

      Status: PROVISIONAL

      Source sequence(s)
      BC111353
      UniProtKB/TrEMBL
      Q2T9M5
      Related
      ENSBTAP00000027792.5, ENSBTAT00000027792.5
      Conserved Domains (1) summary
      cd12728
      Location:50137
      RRM_like_Smg4_UPF3B; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog B on chromosome X (Upf3B)

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      4167940..4184434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005227440.4XP_005227497.1  regulator of nonsense transcripts 3B isoform X2

      See identical proteins and their annotated locations for XP_005227497.1

      Conserved Domains (1) summary
      cd12728
      Location:50137
      RRM_like_Smg4_UPF3B; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog B on chromosome X (Upf3B)
    2. XM_024988250.1XP_024844018.1  regulator of nonsense transcripts 3B isoform X3

      Conserved Domains (1) summary
      cd12728
      Location:26110
      RRM_like_Smg4_UPF3B; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog B on chromosome X (Upf3B)
    3. XM_024988251.1XP_024844019.1  regulator of nonsense transcripts 3B isoform X5

      Conserved Domains (1) summary
      pfam03467
      Location:2135
      Smg4_UPF3; Smg-4/UPF3 family
    4. XM_005227441.4XP_005227498.1  regulator of nonsense transcripts 3B isoform X4

      See identical proteins and their annotated locations for XP_005227498.1

      Conserved Domains (1) summary
      pfam03467
      Location:2135
      Smg4_UPF3; Smg-4/UPF3 family
    5. XM_005227439.4XP_005227496.1  regulator of nonsense transcripts 3B isoform X1

      See identical proteins and their annotated locations for XP_005227496.1

      Conserved Domains (1) summary
      cd12728
      Location:50137
      RRM_like_Smg4_UPF3B; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog B on chromosome X (Upf3B)
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