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    cpne1 copine I [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 613086, updated on 20-Jun-2018

    Summary

    Symbol
    cpne1provided by Xenbase
    Full Name
    copine Iprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-982405
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See cpne1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (34211234..34228782, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668245.1 (6272060..6289612)

    Chromosome 10 - NC_030686.1Genomic Context describing neighboring genes Neighboring gene fer-1-like protein 4 Neighboring gene fer-1-like protein 4 Neighboring gene solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 Neighboring gene RNA binding motif protein 12 Neighboring gene NFS1 cysteine desulfurase

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Clone Names

    • MGC108079

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001032323.1NP_001027494.1  copine-1

      See identical proteins and their annotated locations for NP_001027494.1

      Status: PROVISIONAL

      Source sequence(s)
      BC096510
      UniProtKB/TrEMBL
      Q4VA76
      Conserved Domains (3) summary
      cd04047
      Location:138249
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:6124
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:262513
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030686.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      34211234..34228782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018097761.1XP_017953250.1  copine-1 isoform X1

    2. XM_012971805.2XP_012827259.1  copine-1 isoform X1

      Conserved Domains (3) summary
      cd04047
      Location:138250
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:6124
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:263514
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
    3. XM_018097763.1XP_017953252.1  copine-1 isoform X2

      UniProtKB/TrEMBL
      Q4VA76
      Conserved Domains (3) summary
      cd04047
      Location:138249
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:6124
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:262513
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
    4. XM_018097764.1XP_017953253.1  copine-1 isoform X2

      UniProtKB/TrEMBL
      Q4VA76
      Conserved Domains (3) summary
      cd04047
      Location:138249
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:6124
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:262513
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
    5. XM_018097762.1XP_017953251.1  copine-1 isoform X1

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