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    hoxc9a homeobox C9a [ Danio rerio (zebrafish) ]

    Gene ID: 58043, updated on 2-Sep-2018

    Summary

    Official Symbol
    hoxc9aprovided by ZNC
    Official Full Name
    homeobox C9aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-000328-5
    See related
    Ensembl:ENSDARG00000092809 Vega:OTTDARG00000016367
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    bz39; BZ-39; hoxc9; zgc:109844
    Orthologs

    Genomic context

    See hoxc9a in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (36095306..36097769)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (35996503..35998966)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene homeobox C10a Neighboring gene microRNA 196a-1 Neighboring gene si:dkey-81p22.11 Neighboring gene homeobox C3a Neighboring gene homeobox C8a Neighboring gene homeobox C6a

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of vasculogenesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    positive regulation of lymphangiogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    homeobox protein Hox-C9a
    Names
    homeo box C9a
    homeobox gene C-9
    hox-C9

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_131528.3NP_571603.3  homeobox protein Hox-C9a

      Status: VALIDATED

      Source sequence(s)
      BX005254, EH591454
      UniProtKB/TrEMBL
      A2BE65
      Related
      ENSDARP00000105244.2, OTTDARP00000016619, ENSDART00000127384.3, OTTDART00000019661
      Conserved Domains (2) summary
      smart00389
      Location:202251
      HOX; Homeodomain
      pfam04617
      Location:11189
      Hox9_act; Hox9 activation region

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      36095306..36097769
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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