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    cfdp1 craniofacial development protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 567870, updated on 1-Aug-2018

    Summary

    Official Symbol
    cfdp1provided by ZNC
    Official Full Name
    craniofacial development protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5736
    See related
    Ensembl:ENSDARG00000095086 Vega:OTTDARG00000013137
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    rltpr; fi15f05; wu:fi15f05; zgc:136405; si:dkey-6e12.6
    Orthologs

    Genomic context

    See cfdp1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (22416051..22486767)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (22426985..22497701)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene capping protein regulator and myosin 1 linker 2 Neighboring gene transmembrane protein 170A Neighboring gene si:dkey-11d18.2 Neighboring gene BCAR1, Cas family scaffold protein Neighboring gene uncharacterized LOC110438092

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Clone Names

    • MGC136405

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    bone mineralization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cranial skeletal system development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    condensed chromosome kinetochore IEA
    Inferred from Electronic Annotation
    more info
     
    kinetochore IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    craniofacial development protein 1
    Names
    RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100035.1NP_001093505.1  craniofacial development protein 1

      Status: PROVISIONAL

      Source sequence(s)
      BX088593
      UniProtKB/TrEMBL
      A3KPL8
      Related
      ENSDARP00000102660.2, OTTDARP00000013228, ENSDART00000115388.3, OTTDART00000015564
      Conserved Domains (1) summary
      pfam07572
      Location:235307
      BCNT; Bucentaur or craniofacial development

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      22416051..22486767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395025.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      272094..339032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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