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    ddx6 DEAD (Asp-Glu-Ala-Asp) box helicase 6 [ Danio rerio (zebrafish) ]

    Gene ID: 564633, updated on 1-Aug-2018

    Summary

    Official Symbol
    ddx6provided by ZNC
    Official Full Name
    DEAD (Asp-Glu-Ala-Asp) box helicase 6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070912-83
    See related
    Ensembl:ENSDARG00000061338 Vega:OTTDARG00000043240
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    p54a; si:ch211-147p17.1
    Orthologs

    Genomic context

    See ddx6 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (43867184..43884062, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (43873731..43890597, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101885924 Neighboring gene trehalase (brush-border membrane glycoprotein) Neighboring gene C-X-C motif chemokine receptor 5 Neighboring gene B cell CLL/lymphoma 9-like

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    response to heat IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    stress granule assembly IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    stress granule assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasmic ribonucleoprotein granule IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    probable ATP-dependent RNA helicase DDX6
    Names
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
    XP_684923.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      43867184..43884062 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_679831.9XP_684923.1  probable ATP-dependent RNA helicase DDX6

      UniProtKB/TrEMBL
      E7FD91
      Related
      ENSDARP00000081816.5, OTTDARP00000048968, ENSDART00000087382.7
      Conserved Domains (3) summary
      PTZ00424
      Location:99474
      PTZ00424; helicase 45; Provisional
      cd00079
      Location:312438
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:99300
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
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