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    Copz1 coatomer protein complex, subunit zeta 1 [ Mus musculus (house mouse) ]

    Gene ID: 56447, updated on 9-Sep-2018

    Summary

    Official Symbol
    Copz1provided by MGI
    Official Full Name
    coatomer protein complex, subunit zeta 1provided by MGI
    Primary source
    MGI:MGI:1929063
    See related
    Ensembl:ENSMUSG00000060992
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA407760; D4Ertd360e; 5930435A22Rik
    Expression
    Ubiquitous expression in large intestine adult (RPKM 79.6), liver E14.5 (RPKM 69.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Copz1 in Genome Data Viewer
    Location:
    15 F3; 15 58.74 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (103272834..103299869)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (103103349..103130296)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 Neighboring gene nuclear factor, erythroid derived 2 Neighboring gene microRNA 148b Neighboring gene predicted gene, 41406 Neighboring gene G protein-coupled receptor 84 Neighboring gene zinc finger protein 385A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC118060

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intra-Golgi vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    retrograde vesicle-mediated transport, Golgi to ER IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    toxin transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    COPI vesicle coat IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    COPI vesicle coat ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane coat IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    coatomer subunit zeta-1
    Names
    nonclathrin coat protein zeta1-COP
    zeta-1 COP
    zeta-1-coat protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357748.1NP_001344677.1  coatomer subunit zeta-1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC164069
      Conserved Domains (1) summary
      pfam01217
      Location:12153
      Clat_adaptor_s; Clathrin adaptor complex small chain
    2. NM_019817.2NP_062791.1  coatomer subunit zeta-1 isoform 2

      See identical proteins and their annotated locations for NP_062791.1

      Status: VALIDATED

      Source sequence(s)
      AC164069
      Consensus CDS
      CCDS27901.1
      UniProtKB/Swiss-Prot
      P61924
      UniProtKB/TrEMBL
      Q542M2
      Related
      ENSMUSP00000097738.3, ENSMUST00000100162.4
      Conserved Domains (1) summary
      pfam01217
      Location:12153
      Clat_adaptor_s; Clathrin adaptor complex small chain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      103272834..103299869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521211.2XP_006521274.1  coatomer subunit zeta-1 isoform X1

      Related
      ENSMUSP00000155674.1, ENSMUST00000230893.1
      Conserved Domains (1) summary
      pfam01217
      Location:12153
      Clat_adaptor_s; Clathrin adaptor complex small chain
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