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    nolc1 nucleolar and coiled-body phosphoprotein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 561131, updated on 12-Aug-2018

    Summary

    Official Symbol
    nolc1provided by ZNC
    Official Full Name
    nucleolar and coiled-body phosphoprotein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6349
    See related
    Ensembl:ENSDARG00000024561 Vega:OTTDARG00000020651
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    nolc1l; fd05f01; fi49h02; wu:fd05f01; wu:fi49h02
    Orthologs

    Genomic context

    See nolc1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (4973204..4992417, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (4844618..4863829, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene mitochondrial calcium uniporter Neighboring gene mitochondrial calcium uptake 1 Neighboring gene mitochondrial ribosomal protein S6 Neighboring gene prosaposin Neighboring gene ATP-binding cassette, sub-family G (WHITE), member 2c

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    embryonic cranial skeleton morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    nucleolar and coiled-body phosphoprotein 1
    Names
    tcof1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256652.1NP_001243581.1  nucleolar and coiled-body phosphoprotein 1

      See identical proteins and their annotated locations for NP_001243581.1

      Status: VALIDATED

      Source sequence(s)
      CR854925
      UniProtKB/TrEMBL
      B8JIY2
      Related
      ENSDARP00000093426.3, OTTDARP00000021288, ENSDART00000102651.5, OTTDART00000025910
      Conserved Domains (1) summary
      pfam05022
      Location:926992
      SRP40_C; SRP40, C-terminal domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      4973204..4992417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009307086.3XP_009305361.1  nucleolar and coiled-body phosphoprotein 1 isoform X1

      Conserved Domains (1) summary
      pfam05022
      Location:925991
      SRP40_C; SRP40, C-terminal domain
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