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    c1qa complement component 1, q subcomponent, A chain [ Danio rerio (zebrafish) ]

    Gene ID: 553548, updated on 1-Aug-2018

    Summary

    Official Symbol
    c1qaprovided by ZNC
    Official Full Name
    complement component 1, q subcomponent, A chainprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-86
    See related
    Ensembl:ENSDARG00000044613 Vega:OTTDARG00000022714
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:109903

    Genomic context

    See c1qa in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (22721957..22724918, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (22685352..22688313, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene complement component 1, q subcomponent, B chain Neighboring gene complement component 1, q subcomponent, C chain Neighboring gene F-box protein 40, tandem duplicate 1 Neighboring gene F-box protein 40, tandem duplicate 2

    Genomic regions, transcripts, and products

    Bibliography

    General gene information

    Homology

    Clone Names

    • MGC109903

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    complement activation, classical pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    complement activation, classical pathway IEA
    Inferred from Electronic Annotation
    more info
     
    protein homotrimerization IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    complement C1q subcomponent subunit A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020527.1NP_001018363.1  complement C1q subcomponent subunit A precursor

      See identical proteins and their annotated locations for NP_001018363.1

      Status: PROVISIONAL

      Source sequence(s)
      BC095042
      UniProtKB/TrEMBL
      Q504F7
      Related
      ENSDARP00000039319.7, OTTDARP00000023981, ENSDART00000035469.8, OTTDART00000029367
      Conserved Domains (2) summary
      pfam01391
      Location:32101
      Collagen; Collagen triple helix repeat (20 copies)
      cl23878
      Location:110245
      C1q; C1q domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      22721957..22724918 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395091.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      144673..147634 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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