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    hcfc2 host cell factor C2 [ Danio rerio (zebrafish) ]

    Gene ID: 550401, updated on 1-Aug-2018

    Summary

    Official Symbol
    hcfc2provided by ZNC
    Official Full Name
    host cell factor C2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-203
    See related
    Ensembl:ENSDARG00000058127 Vega:OTTDARG00000036097
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:112202; si:ch73-376i21.2
    Orthologs

    Genomic context

    See hcfc2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (9183657..9196304, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (9182741..9195388, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene carbohydrate (chondroitin 4) sulfotransferase 11 Neighboring gene nuclear transcription factor Y, beta a Neighboring gene arginine vasopressin receptor 1Ab Neighboring gene SLIT-ROBO Rho GTPase activating protein 1b

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    MLL1 complex IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327839.1NP_001314768.1  host cell factor 2

      Status: VALIDATED

      Source sequence(s)
      FP236856
      UniProtKB/TrEMBL
      X1WCP5
      Related
      ENSDARP00000127992.1, OTTDARP00000040439, ENSDART00000153963.3, OTTDART00000051436
      Conserved Domains (5) summary
      cd00063
      Location:574677
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:189240
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:2158
      Kelch_1; Kelch motif
      pfam13415
      Location:206252
      Kelch_3; Galactose oxidase, central domain
      pfam13854
      Location:123167
      Kelch_5; Kelch motif

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      9183657..9196304 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001017706.1: Suppressed sequence

      Description
      NM_001017706.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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