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    TTC38 tetratricopeptide repeat domain 38 [ Homo sapiens (human) ]

    Gene ID: 55020, updated on 5-Aug-2018

    Summary

    Official Symbol
    TTC38provided by HGNC
    Official Full Name
    tetratricopeptide repeat domain 38provided by HGNC
    Primary source
    HGNC:HGNC:26082
    See related
    Ensembl:ENSG00000075234 Vega:OTTHUMG00000150494
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LL22NC03-5H6.5
    Expression
    Broad expression in kidney (RPKM 26.4), small intestine (RPKM 22.0) and 25 other tissues See more
    Orthologs

    Genomic context

    See TTC38 in Genome Data Viewer
    Location:
    22q13.31
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 22 NC_000022.11 (46267964..46294008)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (46663861..46689905)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene cysteine rich DPF motif domain containing 1 Neighboring gene polycystin family receptor for egg jelly Neighboring gene GTSE1 divergent transcript Neighboring gene G2 and S-phase expressed 1 Neighboring gene tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ20699

    General protein information

    Preferred Names
    tetratricopeptide repeat protein 38
    Names
    TPR repeat protein 38

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_017931.2NP_060401.2  tetratricopeptide repeat protein 38

      See identical proteins and their annotated locations for NP_060401.2

      Status: VALIDATED

      Source sequence(s)
      AI243497, BC018918, DA762669
      Consensus CDS
      CCDS43030.1
      UniProtKB/Swiss-Prot
      Q5R3I4
      Related
      ENSP00000370419.3, OTTHUMP00000197572, ENST00000381031.7, OTTHUMT00000318469
      Conserved Domains (2) summary
      cd05804
      Location:60423
      StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
      sd00006
      Location:213243
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p12 Primary Assembly

      Range
      46267964..46294008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011530259.1XP_011528561.1  tetratricopeptide repeat protein 38 isoform X1

      Conserved Domains (2) summary
      cd05804
      Location:1358
      StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
      sd00006
      Location:148178
      TPR; TPR repeat [structural motif]
    2. XM_011530260.3XP_011528562.1  tetratricopeptide repeat protein 38 isoform X2

      Related
      ENSP00000410095.1, OTTHUMP00000197575, ENST00000421359.5
      Conserved Domains (1) summary
      cd05804
      Location:60206
      StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...

    RNA

    1. XR_002958710.1 RNA Sequence

    2. XR_001755259.2 RNA Sequence

    3. XR_001755258.2 RNA Sequence

    4. XR_244380.4 RNA Sequence

    5. XR_001755260.2 RNA Sequence

    6. XR_001755257.1 RNA Sequence

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