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    rpap3 RNA polymerase II associated protein 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549434, updated on 20-Jun-2018

    Summary

    Symbol
    rpap3provided by Xenbase
    Full Name
    RNA polymerase II associated protein 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5779008
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See rpap3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (53807470..53826141)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668234.1 (91862716..91881536)

    Chromosome 3 - NC_030679.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeats and immunoglobulin like domains 3 Neighboring gene ATP23 metallopeptidase and ATP synthase assembly factor homolog Neighboring gene uncharacterized LOC105946836 Neighboring gene probable G-protein coupled receptor 61 Neighboring gene adhesion molecule with Ig-like domain 2

    Genomic regions, transcripts, and products

    General gene information

    Homology

    General protein information

    Preferred Names
    RNA polymerase II-associated protein 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016680.2NP_001016680.1  RNA polymerase II-associated protein 3

      See identical proteins and their annotated locations for NP_001016680.1

      Status: PROVISIONAL

      Source sequence(s)
      CR760208
      UniProtKB/Swiss-Prot
      Q28IV3
      Conserved Domains (5) summary
      smart00028
      Location:290317
      TPR; Tetratricopeptide repeats
      sd00006
      Location:132160
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:200233
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:283348
      TPR_11; TPR repeat
      pfam13877
      Location:537628
      RPAP3_C; Potential Monad-binding region of RPAP3

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030679.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      53807470..53826141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012959037.2XP_012814491.1  RNA polymerase II-associated protein 3 isoform X1

      See identical proteins and their annotated locations for XP_012814491.1

      UniProtKB/Swiss-Prot
      Q28IV3
      Conserved Domains (5) summary
      smart00028
      Location:290317
      TPR; Tetratricopeptide repeats
      sd00006
      Location:132160
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:200233
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:283348
      TPR_11; TPR repeat
      pfam13877
      Location:537628
      RPAP3_C; Potential Monad-binding region of RPAP3
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