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    tdo2 tryptophan 2,3-dioxygenase [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548450, updated on 20-Jun-2018

    Summary

    Symbol
    tdo2provided by Xenbase
    Full Name
    tryptophan 2,3-dioxygenaseprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-976712
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See tdo2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (44559553..44569764, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (170719587..170729798)

    Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene glycine receptor beta Neighboring gene platelet derived growth factor C Neighboring gene acid sensing ion channel subunit family member 5 Neighboring gene guanylate cyclase 1 soluble subunit beta 1 Neighboring gene guanylate cyclase 1 soluble subunit alpha 1

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Clone Names

    • MGC107895

    General protein information

    Preferred Names
    tryptophan 2,3-dioxygenase
    NP_001015733.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015733.1NP_001015733.1  tryptophan 2,3-dioxygenase

      See identical proteins and their annotated locations for NP_001015733.1

      Status: PROVISIONAL

      Source sequence(s)
      BC089667
      UniProtKB/Swiss-Prot
      Q5EBG2
      Conserved Domains (1) summary
      pfam03301
      Location:26372
      Trp_dioxygenase; Tryptophan 2,3-dioxygenase

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      44559553..44569764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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