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    asb1 ankyrin repeat and SOCS box containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548381, updated on 20-Jun-2018

    Summary

    Symbol
    asb1provided by Xenbase
    Full Name
    ankyrin repeat and SOCS box containing 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5793268
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See asb1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (55634423..55643643)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668244.1 (48230700..48239235)

    Chromosome 9 - NC_030685.1Genomic Context describing neighboring genes Neighboring gene TRAF3 interacting protein 1 Neighboring gene pancreas transcription factor 1 subunit alpha-like Neighboring gene anterior gradient 1 Neighboring gene histone deacetylase 4

    Genomic regions, transcripts, and products

    General gene information

    Homology

    General protein information

    Preferred Names
    ankyrin repeat and SOCS box protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030685.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      55634423..55643643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004917881.3XP_004917938.1  ankyrin repeat and SOCS box protein 1 isoform X1

      Conserved Domains (4) summary
      cd00204
      Location:31156
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd03720
      Location:298339
      SOCS_ASB1; SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The ...
      pfam12796
      Location:33130
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:71100
      ANK; ANK repeat [structural motif]
    2. XM_002932006.4XP_002932052.1  ankyrin repeat and SOCS box protein 1 isoform X2

      Conserved Domains (4) summary
      cd00204
      Location:31156
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd03720
      Location:285326
      SOCS_ASB1; SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The ...
      pfam12796
      Location:74164
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:71100
      ANK; ANK repeat [structural motif]
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