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    Bdp1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [ Mus musculus (house mouse) ]

    Gene ID: 544971, updated on 2-Oct-2018

    Summary

    Official Symbol
    Bdp1provided by MGI
    Official Full Name
    B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIBprovided by MGI
    Primary source
    MGI:MGI:1347077
    See related
    Ensembl:ENSMUSG00000049658 Vega:OTTMUSG00000035163
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TFC5; Tfnr; TAF3B1; AI662220; AW049390; AW456745; TFIIIB90; TFIIIB150; mKIAA1241; B130055N23Rik; G630013P12Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 3.1), liver E14 (RPKM 2.4) and 26 other tissues See more
    Orthologs

    Genomic context

    See Bdp1 in Genome Data Viewer
    Location:
    13 D1; 13 52.92 cM
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (100017994..100104073, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (100787949..100874025, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41039 Neighboring gene methylcrotonoyl-Coenzyme A carboxylase 2 (beta) Neighboring gene small EDRK-rich factor 1 Neighboring gene survival motor neuron 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA1241

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA polymerase III general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    TFIIIC-class transcription factor complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA polymerase III preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of transcription, DNA-templated ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    transcription factor TFIIIB complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    transcription factor TFIIIB component B'' homolog
    Names
    transcription factor IIIB 150
    transcription factor-like nuclear regulator

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081061.1NP_001074530.1  transcription factor TFIIIB component B'' homolog

      See identical proteins and their annotated locations for NP_001074530.1

      Status: VALIDATED

      Source sequence(s)
      CT025569, CT030167
      Consensus CDS
      CCDS49343.1
      UniProtKB/Swiss-Prot
      Q571C7
      Related
      ENSMUSP00000038321.5, OTTMUSP00000048957, ENSMUST00000038104.11, OTTMUST00000089552
      Conserved Domains (2) summary
      COG5118
      Location:93416
      BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
      pfam15963
      Location:299382
      Myb_DNA-bind_7; Myb DNA-binding like

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      100017994..100104073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315546.1XP_017171035.1  transcription factor TFIIIB component B'' homolog isoform X6

    2. XM_017315543.1XP_017171032.1  transcription factor TFIIIB component B'' homolog isoform X2

    3. XM_006517726.3XP_006517789.1  transcription factor TFIIIB component B'' homolog isoform X5

      Conserved Domains (2) summary
      COG5118
      Location:93426
      BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
      pfam15963
      Location:299382
      Myb_DNA-bind_7; Myb DNA-binding like
    4. XM_017315545.1XP_017171034.1  transcription factor TFIIIB component B'' homolog isoform X4

    5. XM_017315544.1XP_017171033.1  transcription factor TFIIIB component B'' homolog isoform X3

    6. XM_006517725.3XP_006517788.1  transcription factor TFIIIB component B'' homolog isoform X1

      UniProtKB/Swiss-Prot
      Q571C7
      Related
      ENSMUSP00000105005.2, OTTMUSP00000048959, ENSMUST00000109379.8, OTTMUST00000089554
      Conserved Domains (2) summary
      COG5118
      Location:93426
      BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
      pfam15963
      Location:299382
      Myb_DNA-bind_7; Myb DNA-binding like

    RNA

    1. XR_382739.1 RNA Sequence

    Reference GRCm38.p4 129S1/SvImJ

    Genomic

    1. NT_187006.1 Reference GRCm38.p4 129S1/SvImJ

      Range
      441..28996 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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