Format

Send to:

Choose Destination
    • Showing Current items.

    gtc102 global transcription factor C (Spt16) [ Zea mays ]

    Gene ID: 542546, updated on 26-Feb-2018

    Summary

    Gene symbol
    gtc102
    Gene description
    global transcription factor C (Spt16)
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    SPT16; GRMZM5G806358

    Genomic context

    See gtc102 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (71505922..71509441, complement)
    100 previous assembly B73 RefGen_v3 (GCF_000005005.1) 5 NC_024463.1 (69544362..69547862, complement)

    Chromosome 5 - NC_024463.2Genomic Context describing neighboring genes Neighboring gene FACT complex subunit SPT16 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene uncharacterized LOC109939497 Neighboring gene trichohyalin-like

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    FACT complex subunit SPT16
    Names
    PCO111106
    facilitates chromatin transcription complex subunit SPT16
    global transcription factor group C 102
    global transcription factor group C protein 102
    gtc101
    gtc103
    mcg4761
    std947040H10

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112087.2NP_001105557.1  FACT complex subunit SPT16

      See identical proteins and their annotated locations for NP_001105557.1

      Status: VALIDATED

      Source sequence(s)
      AF545812, EU940905
      UniProtKB/Swiss-Prot
      Q8H6B1
      Conserved Domains (5) summary
      COG5406
      Location:141012
      COG5406; Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics]
      cd01091
      Location:192432
      CDC68-like; Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
      pfam08512
      Location:821900
      Rtt106; Histone chaperone Rttp106-like
      pfam08644
      Location:548694
      SPT16; FACT complex subunit (SPT16/CDC68)
      pfam14826
      Location:16179
      FACT-Spt16_Nlob; FACT complex subunit SPT16 N-terminal lobe domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference B73 RefGen_v4 Primary Assembly

    Genomic

    1. NC_024463.2 Reference B73 RefGen_v4 Primary Assembly

      Range
      71505922..71509441 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center