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    crip1 cysteine-rich protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 541319, updated on 1-Aug-2018

    Summary

    Official Symbol
    crip1provided by ZNC
    Official Full Name
    cysteine-rich protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041111-1
    See related
    Ensembl:ENSDARG00000053858 Vega:OTTDARG00000022803
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:103738
    Orthologs

    Genomic context

    See crip1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (37384965..37395492, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (37437380..37447907, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene prostaglandin reductase 2 Neighboring gene ELM2 and Myb/SANT-like domain containing 1b Neighboring gene uncharacterized LOC110438049 Neighboring gene cysteine-rich protein 2

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    AT DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    DNA binding, bending ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    peptide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    zinc ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    cellular response to UV-B ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to antibiotic ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    heart contraction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    heart development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    intrinsic apoptotic signaling pathway in response to DNA damage ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    response to zinc ion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    cysteine-rich protein 1
    Names
    cysteine-rich protein 1 (intestinal)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001159819.3NP_001153291.1  cysteine-rich protein 1

      See identical proteins and their annotated locations for NP_001153291.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 3' UTR compared to variant 2. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      CR382330, EH448023, EH527149, EH605218
      UniProtKB/TrEMBL
      Q5BKV7
      Related
      ENSDARP00000070454.3, OTTDARP00000024104, ENSDART00000075975.4, OTTDART00000029530
      Conserved Domains (1) summary
      cd09478
      Location:457
      LIM_CRIP; The LIM domain of Cysteine-Rich Intestinal Protein (CRIP)
    2. NM_001166582.2NP_001160054.1  cysteine-rich protein 1

      See identical proteins and their annotated locations for NP_001160054.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      CR382330, EH443742, EH448023, EH527149, EH605218
      UniProtKB/TrEMBL
      Q5BKV7
      Related
      ENSDARP00000112846.1, OTTDARP00000024105, ENSDART00000148160.3, OTTDART00000029531
      Conserved Domains (1) summary
      cd09478
      Location:457
      LIM_CRIP; The LIM domain of Cysteine-Rich Intestinal Protein (CRIP)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      37384965..37395492 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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