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    VPS11 VPS11 core subunit of CORVET and HOPS complexes [ Bos taurus (cattle) ]

    Gene ID: 540381, updated on 31-Jan-2019

    Summary

    Official Symbol
    VPS11provided by VGNC
    Official Full Name
    VPS11 core subunit of CORVET and HOPS complexesprovided by VGNC
    Primary source
    VGNC:VGNC:36809
    See related
    BGD:BT19063; Ensembl:ENSBTAG00000005357
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See VPS11 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 15 NC_037342.1 (29653344..29663614)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 15 AC_000172.1 (30181483..30191824)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 37 member 4 Neighboring gene hypoxia up-regulated 1 Neighboring gene hydroxymethylbilane synthase Neighboring gene H2A histone family, member X

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Clone Names

    • MGC137371

    General protein information

    Preferred Names
    vacuolar protein sorting-associated protein 11 homolog
    Names
    VPS11, CORVET/HOPS core subunit
    vacuolar protein sorting 11 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076216.2NP_001069684.1  vacuolar protein sorting-associated protein 11 homolog

      See identical proteins and their annotated locations for NP_001069684.1

      Status: PROVISIONAL

      Source sequence(s)
      BC114084
      UniProtKB/TrEMBL
      Q24K07
      Related
      ENSBTAP00000007042.3, ENSBTAT00000007042.4
      Conserved Domains (5) summary
      smart00299
      Location:411535
      CLH; Clathrin heavy chain repeat homology
      cd00162
      Location:821860
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00637
      Location:417536
      Clathrin; Region in Clathrin and VPS
      pfam12451
      Location:862907
      VPS11_C; Vacuolar protein sorting protein 11 C terminal
      cl02567
      Location:142292
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      29653344..29663614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010812509.3XP_010810811.2  vacuolar protein sorting-associated protein 11 homolog isoform X1

      Conserved Domains (4) summary
      pfam00637
      Location:421540
      Clathrin; Region in Clathrin and VPS
      pfam12451
      Location:868911
      VPS11_C; Vacuolar protein sorting protein 11 C terminal
      cd16688
      Location:824867
      RING-H2_Vps11; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 11 homolog (Vps11) and similar proteins
      cl25539
      Location:146296
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_024975463.1XP_024831231.1  vacuolar protein sorting-associated protein 11 homolog isoform X2

      Conserved Domains (4) summary
      pfam00637
      Location:358477
      Clathrin; Region in Clathrin and VPS
      pfam12451
      Location:805848
      VPS11_C; Vacuolar protein sorting protein 11 C terminal
      cd16688
      Location:761804
      RING-H2_Vps11; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 11 homolog (Vps11) and similar proteins
      cl25539
      Location:83233
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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