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    LIMS1 LIM zinc finger domain containing 1 [ Bos taurus (cattle) ]

    Gene ID: 540281, updated on 14-Jan-2019

    Summary

    Official Symbol
    LIMS1provided by VGNC
    Official Full Name
    LIM zinc finger domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:50211
    See related
    Ensembl:ENSBTAG00000010971
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    LIMS3; LIMS3L
    Orthologs

    Genomic context

    See LIMS1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 11 NC_037338.1 (44713826..44796651, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 11 AC_000168.1 (44576186..44658665, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 138 Neighboring gene RAN binding protein 2 Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene sulfotransferase 1C4

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Homology

    Clone Names

    • MGC142792

    General protein information

    Preferred Names
    LIM and senescent cell antigen-like-containing domain protein 1
    Names
    LIM and senescent cell antigen-like domains 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083495.1NP_001076964.1  LIM and senescent cell antigen-like-containing domain protein 1

      See identical proteins and their annotated locations for NP_001076964.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123746
      UniProtKB/TrEMBL
      A4FV50
      Conserved Domains (5) summary
      cd09331
      Location:2280
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:83134
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:147197
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:203256
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:264317
      LIM5_PINCH; The fifth LIM domain of protein PINCH

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      44713826..44796651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010809980.3XP_010808282.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X6

      See identical proteins and their annotated locations for XP_010808282.1

      Related
      ENSBTAP00000062796.1, ENSBTAT00000084407.1
      Conserved Domains (5) summary
      cd09331
      Location:2280
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:83134
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:147197
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:203256
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:264317
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    2. XM_024999062.1XP_024854830.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X5

      Conserved Domains (5) summary
      cd09331
      Location:3088
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:91142
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:155205
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:211264
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:272325
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    3. XM_005212663.4XP_005212720.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X9

      See identical proteins and their annotated locations for XP_005212720.1

      Conserved Domains (5) summary
      cd09331
      Location:1068
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252305
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    4. XM_024999065.1XP_024854833.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X10

      Conserved Domains (5) summary
      cd09331
      Location:1068
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:71122
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:135185
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:191244
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:252305
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    5. XM_024999063.1XP_024854831.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X7

      Conserved Domains (5) summary
      cd09331
      Location:1472
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:75126
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:139189
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:195248
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:256309
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    6. XM_005212661.3XP_005212718.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X4

      See identical proteins and their annotated locations for XP_005212718.1

      Related
      ENSBTAP00000014566.5, ENSBTAT00000014566.5
      Conserved Domains (5) summary
      cd09331
      Location:47105
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:108159
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:172222
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:228281
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:289342
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    7. XM_010809979.3XP_010808281.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

      See identical proteins and their annotated locations for XP_010808281.1

      Conserved Domains (5) summary
      cd09331
      Location:47105
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:108159
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:172222
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:228281
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:289342
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    8. XM_024999064.1XP_024854832.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X8

      Conserved Domains (5) summary
      cd09331
      Location:1371
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:74125
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:138188
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:194247
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:255308
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    9. XM_005212660.4XP_005212717.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005212717.1

      Related
      ENSBTAP00000058462.1, ENSBTAT00000087084.1
      Conserved Domains (5) summary
      cd09331
      Location:71129
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:132183
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:196246
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:252305
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:313366
      LIM5_PINCH; The fifth LIM domain of protein PINCH
    10. XM_005212659.4XP_005212716.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005212716.1

      Related
      ENSBTAP00000065487.1, ENSBTAT00000078283.1
      Conserved Domains (5) summary
      cd09331
      Location:71129
      LIM1_PINCH; The first LIM domain of protein PINCH
      cd09332
      Location:132183
      LIM2_PINCH; The second LIM domain of protein PINCH
      cd09333
      Location:196246
      LIM3_PINCH; The third LIM domain of protein PINCH
      cd09334
      Location:252305
      LIM4_PINCH; The fourth LIM domain of protein PINCH
      cd09335
      Location:313366
      LIM5_PINCH; The fifth LIM domain of protein PINCH
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