Format

Send to:

Choose Destination
    • Showing Current items.

    YOD1 YOD1 deubiquitinase [ Bos taurus (cattle) ]

    Gene ID: 539931, updated on 17-Sep-2018

    Summary

    Official Symbol
    YOD1provided by VGNC
    Official Full Name
    YOD1 deubiquitinaseprovided by VGNC
    Primary source
    VGNC:VGNC:37033
    See related
    BGD:BT11115; Ensembl:ENSBTAG00000020273
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See YOD1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 16 NC_037343.1 (4869645..4871892, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 16 AC_000173.1 (4721588..4723835, complement)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene Fc fragment of IgA and IgM receptor Neighboring gene chromosome 16 C1orf116 homolog Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene complement component 4 binding protein beta

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Clone Names

    • MGC151971

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    Lys48-specific deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    thiol-dependent ubiquitin-specific protease activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquitin-specific protease activity involved in negative regulation of retrograde protein transport, ER to cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    endoplasmic reticulum unfolded protein response ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    macroautophagy ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of retrograde protein transport, ER to cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    protein K11-linked deubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein K27-linked deubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein K29-linked deubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein K33-linked deubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein K48-linked deubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein K63-linked deubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    ubiquitin-dependent ERAD pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    ubiquitin thioesterase OTU1
    Names
    YOD1 OTU deubiquinating enzyme 1 homolog
    NP_001073778.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080309.2NP_001073778.1  ubiquitin thioesterase OTU1

      See identical proteins and their annotated locations for NP_001073778.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122788
      UniProtKB/Swiss-Prot
      Q05B57
      Related
      ENSBTAP00000027017.4, ENSBTAT00000027017.4
      Conserved Domains (1) summary
      COG5539
      Location:55347
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      4869645..4871892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center