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    EBF1 EBF transcription factor 1 [ Bos taurus (cattle) ]

    Gene ID: 537712, updated on 24-Sep-2018

    Summary

    Official Symbol
    EBF1provided by VGNC
    Official Full Name
    EBF transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:50162
    See related
    BGD:BT28913; Ensembl:ENSBTAG00000037508
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See EBF1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 7 NC_037334.1 (70284253..70694732, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 7 AC_000164.1 (72394110..72804886, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene chromobox protein homolog 1 pseudogene Neighboring gene G2/mitotic-specific cyclin-B2 pseudogene Neighboring gene uncharacterized LOC104969238 Neighboring gene uncharacterized LOC112447469 Neighboring gene ring finger protein 145

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Adipogenesis, organism-specific biosystem (from WikiPathways)
      Adipogenesis, organism-specific biosystemThe different classess of factors involved in adipogenesis are shown. Adipogenesis is the process by which fat cells differentiate from predadipocytes to adipocytes (fat cells). Adipose tissue, compo...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    transcription factor COE1
    Names
    early B cell factor 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192916.3NP_001179845.1  transcription factor COE1

      See identical proteins and their annotated locations for NP_001179845.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000007
      UniProtKB/TrEMBL
      E1BPV4
      Related
      ENSBTAP00000053340.2, ENSBTAT00000061073.2
      Conserved Domains (3) summary
      cd01175
      Location:262346
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:347390
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      70284253..70694732 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005209684.3XP_005209741.1  transcription factor COE1 isoform X2

      See identical proteins and their annotated locations for XP_005209741.1

      Conserved Domains (3) summary
      cd01175
      Location:255339
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:340383
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
    2. XM_024994414.1XP_024850182.1  transcription factor COE1 isoform X4

      Conserved Domains (3) summary
      cd01175
      Location:130214
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      cl17007
      Location:1114
      COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
      pfam16423
      Location:215258
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
    3. XM_010807567.2XP_010805869.1  transcription factor COE1 isoform X1

      See identical proteins and their annotated locations for XP_010805869.1

      Conserved Domains (3) summary
      cd01175
      Location:263347
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:348391
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
    4. XM_005209685.3XP_005209742.1  transcription factor COE1 isoform X3

      See identical proteins and their annotated locations for XP_005209742.1

      Conserved Domains (3) summary
      cd01175
      Location:254338
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:339382
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
    5. XM_024994415.1XP_024850183.1  transcription factor COE1 isoform X5

      Conserved Domains (3) summary
      cd01175
      Location:263347
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:348391
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
    6. XM_024994417.1XP_024850185.1  transcription factor COE1 isoform X7

      Conserved Domains (3) summary
      cd01175
      Location:254338
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:339382
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
    7. XM_024994416.1XP_024850184.1  transcription factor COE1 isoform X6

      Conserved Domains (3) summary
      cd01175
      Location:262346
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:21247
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:347390
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
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