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    EPHB2 EPH receptor B2 [ Bos taurus (cattle) ]

    Gene ID: 535137, updated on 26-Apr-2019

    Summary

    Official Symbol
    EPHB2provided by VGNC
    Official Full Name
    EPH receptor B2provided by VGNC
    Primary source
    VGNC:VGNC:54424
    See related
    BGD:BT27036; Ensembl:ENSBTAG00000045902
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Annotation information
    Annotation category: suggests misassembly
    Orthologs

    Genomic context

    See EPHB2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 2 NC_037329.1 (129898024..130117852, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 2 AC_000159.1 (130498486..130638771, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene testis expressed 46 Neighboring gene lactamase beta like 1 Neighboring gene heterogeneous nuclear ribonucleoproteins A2/B1 pseudogene Neighboring gene complement C1q B chain

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Axon guidance, organism-specific biosystem (from KEGG)
      Axon guidance, organism-specific biosystemAxon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as netrins, ephrins, Slits, and semaphorins. These guidance cues are...
    • Axon guidance, conserved biosystem (from KEGG)
      Axon guidance, conserved biosystemAxon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as netrins, ephrins, Slits, and semaphorins. These guidance cues are...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    ephrin type-B receptor 2
    NP_001178427.1
    XP_024831663.1
    XP_024831665.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191498.2NP_001178427.1  ephrin type-B receptor 2

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000002
      Related
      ENSBTAP00000026780.6, ENSBTAT00000026780.6
      Conserved Domains (7) summary
      cd05065
      Location:595863
      PTKc_EphR_B; Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors
      cd09552
      Location:889959
      SAM_EPH-B2; SAM domain of EPH-B2 subfamily of tyrosine kinase receptors
      smart00454
      Location:889956
      SAM; Sterile alpha motif
      cd10477
      Location:1173
      EphR_LBD_B2; Ligand Binding Domain of Ephrin type-B Receptor 2
      pfam00041
      Location:414496
      fn3; Fibronectin type III domain
      pfam07714
      Location:600859
      Pkinase_Tyr; Protein tyrosine kinase
      pfam14575
      Location:527595
      EphA2_TM; Ephrin type-A receptor 2 transmembrane domain

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      129898024..130117852 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024975897.1XP_024831665.1  ephrin type-B receptor 2 isoform X2

      Conserved Domains (5) summary
      cd05065
      Location:616884
      PTKc_EphR_B; Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors
      cd09552
      Location:910980
      SAM_EPH-B2; SAM domain of EPH-B2 subfamily of tyrosine kinase receptors
      cd10477
      Location:19196
      EphR_LBD_B2; Ligand Binding Domain of Ephrin type-B Receptor 2
      pfam00041
      Location:437520
      fn3; Fibronectin type III domain
      pfam14575
      Location:548616
      EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    2. XM_024975895.1XP_024831663.1  ephrin type-B receptor 2 isoform X1

      Conserved Domains (5) summary
      cd05065
      Location:617885
      PTKc_EphR_B; Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors
      cd09552
      Location:911981
      SAM_EPH-B2; SAM domain of EPH-B2 subfamily of tyrosine kinase receptors
      cd10477
      Location:19196
      EphR_LBD_B2; Ligand Binding Domain of Ephrin type-B Receptor 2
      pfam00041
      Location:437520
      fn3; Fibronectin type III domain
      pfam14575
      Location:548617
      EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
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