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    CLN8 CLN8 transmembrane ER and ERGIC protein [ Bos taurus (domestic cattle) ]

    Gene ID: 530874, updated on 1-Jan-2025
    Official Symbol
    CLN8provided by VGNC
    Official Full Name
    CLN8 transmembrane ER and ERGIC proteinprovided by VGNC
    Primary source
    VGNC:VGNC:106692
    See related
    BGD:BT24671
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
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    See CLN8 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 27 NC_037354.1 (1195748..1262788)

    Chromosome 27 - NC_037354.1Genomic Context describing neighboring genes Neighboring gene glutamate rich 1 Neighboring gene DLG associated protein 2 Neighboring gene uncharacterized LOC112444581 Neighboring gene uncharacterized LOC100335608 Neighboring gene CUB and sushi domain-containing protein 1 Neighboring gene uncharacterized LOC132344027 Neighboring gene uncharacterized LOC132344028

    Genomic Sequence:
    NC_037354.1 Chromosome 27 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Related articles in PubMed

    1. Establishment of a high throughput EST sequencing system using poly(A) tail-removed cDNA libraries and determination of 36,000 bovine ESTs. Takasuga A, et al. Nucleic Acids Res, 2001 Nov 15. PMID 11713328, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Markers

    Homology

    Clone Names

    • MGC139174

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ceramide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    protein CLN8

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075941.2 → NP_001069409.2  protein CLN8

      Status: VALIDATED

      Source sequence(s)
      AV667078, BC118142
      UniProtKB/TrEMBL
      Q17QW5
      Conserved Domains (1) summary
      smart00724
      Location:62 → 260
      TLC; TRAM, LAG1 and CLN8 homology domains

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037354.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      1195748..1262788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024986280.2 → XP_024842048.1  protein CLN8 isoform X1

      UniProtKB/TrEMBL
      Q17QW5
      Conserved Domains (1) summary
      smart00724
      Location:62 → 260
      TLC; TRAM, LAG1 and CLN8 homology domains

    2. XM_024986279.2 → XP_024842047.1  protein CLN8 isoform X1

      UniProtKB/TrEMBL
      Q17QW5
      Conserved Domains (1) summary
      smart00724
      Location:62 → 260
      TLC; TRAM, LAG1 and CLN8 homology domains

    3. XM_024986278.2 → XP_024842046.1  protein CLN8 isoform X1

      UniProtKB/TrEMBL
      Q17QW5
      Conserved Domains (1) summary
      smart00724
      Location:62 → 260
      TLC; TRAM, LAG1 and CLN8 homology domains

    4. XM_024986281.2 → XP_024842049.1  protein CLN8 isoform X1

      UniProtKB/TrEMBL
      Q17QW5
      Conserved Domains (1) summary
      smart00724
      Location:62 → 260
      TLC; TRAM, LAG1 and CLN8 homology domains

    RNA

    1. XR_009493072.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials