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    GIPC1 GIPC PDZ domain containing family member 1 [ Bos taurus (cattle) ]

    Gene ID: 519617, updated on 27-Aug-2018

    Summary

    Official Symbol
    GIPC1provided by VGNC
    Official Full Name
    GIPC PDZ domain containing family member 1provided by VGNC
    Primary source
    VGNC:VGNC:29365
    See related
    BGD:BT16279; Ensembl:ENSBTAG00000000764
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See GIPC1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 7 NC_037334.1 (11285114..11298258)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 7 AC_000164.1 (12382637..12395711)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107132603 Neighboring gene trans-2,3-enoyl-CoA reductase Neighboring gene small EDRK-rich factor 1 pseudogene Neighboring gene DnaJ heat shock protein family (Hsp40) member B1 Neighboring gene prostaglandin E receptor 1 Neighboring gene protein kinase N1 Neighboring gene DExD-box helicase 39A Neighboring gene adhesion G protein-coupled receptor E5

    Genomic regions, transcripts, and products

    General gene information

    Homology

    General protein information

    Preferred Names
    PDZ domain-containing protein GIPC1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193018.1NP_001179947.1  PDZ domain-containing protein GIPC1

      See identical proteins and their annotated locations for NP_001179947.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000007
      UniProtKB/TrEMBL
      E1BJQ7
      Related
      ENSBTAP00000001013.4, ENSBTAT00000001013.4
      Conserved Domains (1) summary
      cd00992
      Location:132210
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      11285114..11298258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010806687.3XP_010804989.1  PDZ domain-containing protein GIPC1 isoform X1

      Conserved Domains (1) summary
      cd00992
      Location:178257
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    2. XM_005208607.4XP_005208664.1  PDZ domain-containing protein GIPC1 isoform X2

      See identical proteins and their annotated locations for XP_005208664.1

      UniProtKB/TrEMBL
      E1BJQ7
      Conserved Domains (1) summary
      cd00992
      Location:132210
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    3. XM_024994231.1XP_024849999.1  PDZ domain-containing protein GIPC1 isoform X2

      Conserved Domains (1) summary
      cd00992
      Location:132210
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    4. XM_010806688.3XP_010804990.1  PDZ domain-containing protein GIPC1 isoform X2

      See identical proteins and their annotated locations for XP_010804990.1

      UniProtKB/TrEMBL
      E1BJQ7
      Conserved Domains (1) summary
      cd00992
      Location:132210
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    5. XM_015471947.2XP_015327433.1  PDZ domain-containing protein GIPC1 isoform X2

      UniProtKB/TrEMBL
      E1BJQ7
      Conserved Domains (1) summary
      cd00992
      Location:132210
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    6. XM_010806689.3XP_010804991.1  PDZ domain-containing protein GIPC1 isoform X2

      See identical proteins and their annotated locations for XP_010804991.1

      UniProtKB/TrEMBL
      E1BJQ7
      Conserved Domains (1) summary
      cd00992
      Location:132210
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
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